Metabolic Engineering Interventions for Sustainable 2,3-Butanediol Production in Gas-Fermenting Clostridium autoethanogenum
- Parsa Ghadermazi, Angela Re, Luca Ricci, …, Angela Re, Luca Ricci, Siu Hung Joshua Chan
- mSystems, 10.1128/msystems.01111-21
Predicting Microbiome Metabolism and Interactions through Integrating Multidisciplinary Principles
- Caleb M Schmidt, Parsa Ghadermazi, Siu Hung Joshua Chan
- mSystems, 10.1128/msystems.00768-21
Predicting Nash equilibria for microbial metabolic interactions
- Jingyi Cai, Tianwei Tan, S H Joshua Chan, Jingyi Cai, Tianwei Tan, Siu H J Chan
- Bioinformatics, 10.1093/bioinformatics/btaa1014
Genome-scale metabolic reconstruction of the non-model yeast Issatchenkia orientalis SD108 and its application to organic acids production
- Patrick F Suthers, Hoang V Dinh, Zia Fatma, …, Joshua D Rabinowitz, Huimin Zhao, Costas D Maranas
- Metab Eng, 10.1016/j.mec.2020.e00148
Bacterial colonization reprograms the neonatal gut metabolome
- Kyle Bittinger, Chunyu Zhao, Yun Li, …, Frederic D Bushman, Babette S Zemel, Gary D Wu
- Nat Microbiol, 10.1038/s41564-020-0694-0
Metabolic Analyses of Nitrogen Fixation in the Soybean Microsymbiont Sinorhizobium fredii Using Constraint-Based Modeling
- Carolina A Contador, Siu-Kit Lo, Siu H J Chan, Hon-Ming Lam
- mSystems, 10.1128/msystems.00516-19
A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data
- Hoang V Dinh, Patrick F Suthers, Siu Hung Joshua Chan, …, Christopher V Rao, Joshua D Rabinowitz, Costas D Maranas
- Metab Eng, 10.1016/j.mec.2019.e00101
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
- Laurent Heirendt, Sylvain Arreckx, Thomas Pfau, …, Bernhard Ø Palsson, Ines Thiele, Ronan M T Fleming
- Nat Protoc, 10.1038/s41596-018-0098-2
Accelerating flux balance calculations in genome-scale metabolic models by localizing the application of loopless constraints
- Siu H J Chan, Lin Wang, Satyakam Dash, Costas D Maranas
- Bioinformatics, 10.1093/bioinformatics/bty446
Standardizing biomass reactions and ensuring complete mass balance in genome-scale metabolic models
- Siu H J Chan, Jingyi Cai, Lin Wang, Margaret N Simons-Senftle, Costas D Maranas
- Bioinformatics, 10.1093/bioinformatics/btx453