Guidelines for extracting biologically relevant context-specific metabolic models using gene expression data
- Saratram Gopalakrishnan, Chintan J Joshi, Miguel Valderrama Gomez, …, William Johnson, Cleo Kontoravdi, Nathan E Lewis
- Metab Eng, 10.1016/j.ymben.2022.12.003
Redistribution of metabolic fluxes in Chlorella protothecoides by variation of media nitrogen concentration
- Saratram Gopalakrishnan, Jordan Baker, Linda Kristoffersen, Michael J Betenbaugh
- Metab Eng, 10.1016/j.meteno.2015.09.004
From Escherichia coli mutant 13C labeling data to a core kinetic model: A kinetic model parameterization pipeline
- Charles J Foster, Saratram Gopalakrishnan, Maciek R Antoniewicz, Costas D Maranas
- PLoS Comput Biol, 10.1371/journal.pcbi.1007319
Elucidation of photoautotrophic carbon flux topology in Synechocystis PCC 6803 using genome-scale carbon mapping models
- Saratram Gopalakrishnan, Himadri B Pakrasi, Costas D Maranas
- Metab Eng, 10.1016/j.ymben.2018.03.008
Deciphering cyanobacterial phenotypes for fast photoautotrophic growth via isotopically nonstationary metabolic flux analysis
- Mary H Abernathy, Jingjie Yu, Fangfang Ma, …, Himadri B Pakrasi, Doug K Allen, Yinjie J Tang
- None, 10.1186/s13068-017-0958-y
Assessing methanotrophy and carbon fixation for biofuel production by Methanosarcina acetivorans
- Hadi Nazem-Bokaee, Saratram Gopalakrishnan, James G Ferry, Thomas K Wood, Costas D Maranas
- Microb Cell Fact, 10.1186/s12934-015-0404-4
Reversing methanogenesis to capture methane for liquid biofuel precursors
- Valerie W C Soo, Michael J McAnulty, Arti Tripathi, …, Costas D Maranas, Andrew D Patterson, Thomas K Wood
- Microb Cell Fact, 10.1186/s12934-015-0397-z