Academic lineage
Flux regulation through glycolysis and respiration is balanced by inositol pyrophosphates in yeast
- Ning Qin, Lingyun Li, Xu Ji, …, Tianwei Tan, Zihe Liu, Jens Nielsen
- Cell, 10.1016/j.cell.2023.01.014
Stress-induced expression is enriched for evolutionarily young genes in diverse budding yeasts
- Tyler W Doughty, Iván Domenzain, Aaron Millan-Oropeza, …, Jean-Marc G Daran, Verena Siewers, John P Morrissey
- Nat Commun, 10.1038/s41467-020-16073-3
Nitrogen limitation reveals large reserves in metabolic and translational capacities of yeast
- Rosemary Yu, Kate Campbell, Rui Pereira, …, Egor Vorontsov, Carina Sihlbom, Jens Nielsen
- Nat Commun, 10.1038/s41467-020-15749-0
Adaptive Laboratory Evolution of Ale and Lager Yeasts for Improved Brewing Efficiency and Beer Quality
- B Gibson, M Dahabieh, K Krogerus, …, R Pereira, V Siewers, V Vidgren
- Annu Rev Food Sci Technol, 10.1146/annurev-food-032519-051715
Discovery and implementation of a novel pathway for n -butanol production via 2-oxoglutarate
- Sofia Ferreira, Rui Pereira, Filipe Liu, Paulo Vilaça, Isabel Rocha
- None, 10.1186/s13068-019-1565-x
Adaptive laboratory evolution of tolerance to dicarboxylic acids in Saccharomyces cerevisiae
- Rui Pereira, Yongjun Wei, Elsayed Mohamed, …, Adam M Feist, Jens Nielsen, Yun Chen
- Metab Eng, 10.1016/j.ymben.2019.09.008
Turnover Dependent Phenotypic Simulation: A Quantitative Constraint-Based Simulation Method That Accommodates All Main Strain Design Strategies
- Rui Pereira, Paulo Vilaça, Paulo Maia, Jens Nielsen, Isabel Rocha
- ACS Synth Biol, 10.1021/acssynbio.8b00248
Reprogramming Yeast Metabolism from Alcoholic Fermentation to Lipogenesis
- Tao Yu, Yongjin J Zhou, Mingtao Huang, …, Rui Pereira, Florian David, Jens Nielsen
- Cell, 10.1016/j.cell.2018.07.013
Improving the flux distributions simulated with genome-scale metabolic models of Saccharomyces cerevisiae
- Rui Pereira, Jens Nielsen, Isabel Rocha
- Metab Eng, 10.1016/j.meteno.2016.05.002
Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D
- Piroon Jenjaroenpun, Thidathip Wongsurawat, Rui Pereira, …, David W Ussery, Jens Nielsen, Intawat Nookaew
- Nucleic Acids Res, 10.1093/nar/gky014