zol & fai: large-scale targeted detection and evolutionary investigation of gene clusters
- Rauf Salamzade, Patricia Tran, Cody Martin, …, Ashlee M Earl, Karthik Anantharaman, Lindsay R Kalan
- None, 10.1101/2023.06.07.544063
Global diversity of enterococci and description of 18 novel species
- Julia A Schwartzman, Francois Lebreton, Rauf Salamzade, …, Abigail L Manson, Ashlee M Earl, Michael S Gilmore
- None, 10.1101/2023.05.18.540996
Evolutionary investigations of the biosynthetic diversity in the skin microbiome using lsa BGC
- Rauf Salamzade, J Z Alex Cheong, Shelby Sandstrom, …, Cameron R Currie, Anne Marie Singh, Lindsay R Kalan
- Microb Genom, 10.1099/mgen.0.000988
vRhyme enables binning of viral genomes from metagenomes
- Kristopher Kieft, Alyssa Adams, Rauf Salamzade, …, Rauf Salamzade, Lindsay Kalan, Karthik Anantharaman
- Nucleic Acids Res, 10.1093/nar/gkac341
Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance
- Rauf Salamzade, Abigail L Manson, Bruce J Walker, …, Virginia M Pierce, Roby P Bhattacharyya, Ashlee M Earl
- Genome Med, 10.1186/s13073-022-01040-y
Genes Contributing to the Unique Biology and Intrinsic Antibiotic Resistance of Enterococcus faecalis
- Michael S Gilmore, Rauf Salamzade, Elizabeth Selleck, …, Suelen S Mello, Abigail L Manson, Ashlee M Earl
- mBio, 10.1128/mbio.02962-20
Key Transitions in the Evolution of Rapid and Slow Growing Mycobacteria Identified by Comparative Genomics
- Nathan L Bachmann, Rauf Salamzade, Abigail L Manson, …, Vitali Sintchenko, Ashlee M Earl, Ben J Marais
- None, 10.3389/fmicb.2019.03019
Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution
- James A Cahill, Richard E Green, Tara L Fulton, …, Ian Stirling, Montgomery Slatkin, Beth Shapiro
- PLoS Genet, 10.1371/journal.pgen.1003345