Expanding Extender Substrate Selection for Unnatural Polyketide Biosynthesis by Acyltransferase Domain Exchange within a Modular Polyketide Synthase
- Elias Englund, Matthias Schmidt, Alberto A Nava, …, Leonard Katz, Satoshi Yuzawa, Jay D Keasling
- J Am Chem Soc, 10.1021/jacs.2c11027
Potent and selective covalent inhibition of the papain-like protease from SARS-CoV-2
- Suman Pokhrel, Audrey D Labbe, Irimpan I Mathews, …, Stephanie Galanie, Martha S Head, Jerry M Parks
- Nat Commun, 10.1038/s41467-023-37254-w
Accelerating crystal structure determination with iterative AlphaFold prediction
- Thomas C Terwilliger, Pavel V Afonine, Dorothee Liebschner, …, Jane S Richardson, Randy J Read, Paul D Adams
- Acta Crystallogr D Struct Biol, 10.1107/s205979832300102x
In situ ligand restraints from quantum-mechanical methods
- Dorothee Liebschner, Nigel W Moriarty, Billy K Poon, …, Nigel W Moriarty, Billy K Poon, Paul D Adams
- Acta Crystallogr D Struct Biol, 10.1107/s2059798323000025
Rapid quantification of alcohol production in microorganisms based on nanostructure-initiator mass spectrometry (NIMS)
- Kai Deng, Xi Wang, Nicole Ing, …, Anup K Singh, Taek Soon Lee, Trent R Northen
- Anal Biochem, 10.1016/j.ab.2022.114997
Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction
- Lauren M Tom, Martina Aulitto, Yu-Wei Wu, …, Blake A Simmons, Javier A Ceja-Navarro, Steven W Singer
- Microbiome, 10.1186/s40168-022-01377-x
Improved AlphaFold modeling with implicit experimental information
- Thomas C Terwilliger, Billy K Poon, Pavel V Afonine, …, Jane S Richardson, Randy J Read, Paul D Adams
- Nat Methods, 10.1038/s41592-022-01645-6
Structural plasticity enables evolution and innovation of RuBisCO assemblies
- Albert K Liu, Jose H Pereira, Alexander J Kehl, …, Paul D Adams, Justin B Siegel, Patrick M Shih
- Sci Adv, 10.1126/sciadv.adc9440
Hepatitis C virus NS3/4A inhibitors and other drug-like compounds as covalent binders of SARS-CoV-2 main protease
- Babak Andi, Desigan Kumaran, Dale F Kreitler, …, Jurgen G Schmidt, Martha S Head, Sean McSweeney
- Sci Rep, 10.1038/s41598-022-15930-z
PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology
- John D Westbrook, Jasmine Y Young, Chenghua Shao, …, Helen M Berman, Stephen K Burley, Ezra Peisach
- J Mol Biol, 10.1016/j.jmb.2022.167599