Academic lineage
- Joshua D Rabinowitz - PhD student, Postdoctoral Associate
Four-part harmony between diet, drugs, microbes, and host
- Patrick H Bradley, Patrick H Bradley, Patrick H Bradley, Patrick H Bradley, Patrick H Bradley
- Cell Host Microbe, 10.1016/j.chom.2023.04.013
Host and gut bacteria share metabolic pathways for anti-cancer drug metabolism
- Peter Spanogiannopoulos, Than S Kyaw, Ben G H Guthrie, …, Andrei Goga, Katherine S Pollard, Peter J Turnbaugh
- Nat Microbiol, 10.1038/s41564-022-01226-5
Building a chemical blueprint for human blood
- Patrick H Bradley, Katherine S Pollard
- Nature, 10.1038/d41586-020-03122-6
phylogenize: correcting for phylogeny reveals genes associated with microbial distributions
- Patrick H Bradley, Katherine S Pollard
- Bioinformatics, 10.1093/bioinformatics/btz722
Minor Isozymes Tailor Yeast Metabolism to Carbon Availability
- Patrick H Bradley, Patrick A Gibney, David Botstein, Olga G Troyanskaya, Joshua D Rabinowitz
- mSystems, 10.1128/msystems.00170-18
Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
- Patrick H Bradley, Stephen Nayfach, Katherine S Pollard
- PLoS Comput Biol, 10.1371/journal.pcbi.1006242
Proteobacteria explain significant functional variability in the human gut microbiome
- Patrick H Bradley, Katherine S Pollard
- Microbiome, 10.1186/s40168-017-0244-z
Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes
- Stephen Nayfach, Patrick H Bradley, Stacia K Wyman, …, Jonathan A Eisen, Katherine S Pollard, Thomas J Sharpton
- PLoS Comput Biol, 10.1371/journal.pcbi.1004573
A new system for comparative functional genomics of Saccharomyces yeasts
- Amy A Caudy, Yuanfang Guan, Yue Jia, …, David Botstein, Olga G Troyanskaya, Maitreya J Dunham
- Genetics, 10.1534/genetics.113.152918
Phylogenetic portrait of the Saccharomyces cerevisiae functional genome
- Patrick A Gibney, Mark J Hickman, Patrick H Bradley, John C Matese, David Botstein
- G3 (Bethesda), 10.1534/g3.113.006585
Yeast cells can access distinct quiescent states
- Maja M Klosinska, Christopher A Crutchfield, Patrick H Bradley, Joshua D Rabinowitz, James R Broach
- Genes Dev, 10.1101/gad.2011311
Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations
- Viktor M Boer, Christopher A Crutchfield, Patrick H Bradley, David Botstein, Joshua D Rabinowitz
- Mol Biol Cell, 10.1091/mbc.e09-07-0597