Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During C. elegans Aging
- Janna Hastings, Abraham Mains, Bhupinder Virk, …, Sven Bergmann, Nicolas Le Novère, Olivia Casanueva
- None, 10.3389/fmolb.2019.00002
Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)
- Dagmar Waltemath, Frank T Bergmann, Claudine Chaouiya, …, Lucian Smith, Fengkai Zhang, Eric Bonnet
- None, 10.1186/s40793-018-0320-4
BioModels: expanding horizons to include more modelling approaches and formats
- Mihai Glont, Tung V N Nguyen, Martin Graesslin, …, Vijayalakshmi Chelliah, Nicolas Le Novère, Henning Hermjakob
- Nucleic Acids Res, 10.1093/nar/gkx1023
The systems biology format converter
- Nicolas Rodriguez, Jean-Baptiste Pettit, Piero Dalle Pezze, …, Melanie I Stefan, Chris T Evelo, Nicolas Le Novère
- BMC Bioinformatics, 10.1186/s12859-016-1000-2
COMBINE Archive Specification Version 1
- Frank T Bergmann, Nicolas Rodriguez, Nicolas Le Novère
- J Integr Bioinform, 10.2390/biecoll-jib-2015-261
BioModels: Content, Features, Functionality, and Use
- N Juty, R Ali, M Glont, …, N Le Novère, C Laibe, V Chelliah
- CPT Pharmacometrics Syst Pharmacol, 10.1002/psp4.3
JSBML 1.0: providing a smorgasbord of options to encode systems biology models
- Nicolas Rodriguez, Alex Thomas, Leandro Watanabe, …, Bernhard Ø Palsson, Michael Hucka, Andreas Dräger
- Bioinformatics, 10.1093/bioinformatics/btv341
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
- Frank T Bergmann, Richard Adams, Stuart Moodie, …, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
- BMC Bioinformatics, 10.1186/s12859-014-0369-z
BioModels: ten-year anniversary
- Vijayalakshmi Chelliah, Nick Juty, Ishan Ajmera, …, Henning Hermjakob, Nicolas Le Novère, Camille Laibe
- Nucleic Acids Res, 10.1093/nar/gku1181
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
- Claudine Chaouiya, Duncan Bérenguier, Sarah M Keating, …, Nicolas Le Novère, Julio Saez-Rodriguez, Tomáš Helikar
- None, 10.1186/1752-0509-7-135
The systems biology simulation core algorithm
- Roland Keller, Alexander Dörr, Akito Tabira, …, Hannes Planatscher, Andreas Zell, Andreas Dräger
- None, 10.1186/1752-0509-7-55