Academic lineage
- Ron Milo - Postdoctoral Associate
- Uri Alon - PhD student, Postdoctoral Associate
- Bernhard Ø Palsson - Ph.D. student
Glycosylation shapes the efficacy and safety of diverse protein, gene and cell therapies
- Frances Rocamora, Angelo G Peralta, Seunghyeon Shin, …, Eric A Toth, Thomas R Fuerst, Nathan E Lewis
- Biotechnol Adv, 10.1016/j.biotechadv.2023.108206
Single-cell A/B testing for cell-cell communication
- Caitlin M Aamodt, Nathan E Lewis, Caitlin M Aamodt, Nathan E Lewis, Caitlin M Aamodt, Nathan E Lewis
- Cell Syst, 10.1016/j.cels.2023.05.006
A Boltzmann model predicts glycan structures from lectin binding
- A J Yom, Austin W T Chiang, Nathan E Lewis, …, A J Yom, Austin W T Chiang, Nathan E Lewis
- None, 10.1101/2023.06.03.543532
Variant STAT4 and Response to Ruxolitinib in an Autoinflammatory Syndrome
- Hratch Baghdassarian, Sarah A Blackstone, Owen S Clay, …, Hirotsugu Oda, Christopher D Putnam, Lori Broderick
- N Engl J Med, 10.1056/nejmoa2202318
Inferring secretory and metabolic pathway activity from omic data with secCellFie
- Helen O Masson, Mojtaba Samoudi, Caressa M Robinson, …, Bjorn G Voldborg, Susan T Sharfstein, Nathan E Lewis
- None, 10.1101/2023.05.04.539316
Combining LIANA and Tensor-cell2cell to decipher cell-cell communication across multiple samples
- Hratch Baghdassarian, Daniel Dimitrov, Erick Armingol, …, Erick Armingol, Julio Saez-Rodriguez, Nathan E Lewis
- None, 10.1101/2023.04.28.538731
GlycoMME, a Markov modeling platform for studying N-glycosylation biosynthesis from glycomics data
- Chenguang Liang, Austin W T Chiang, Nathan E Lewis, …, Chenguang Liang, Austin W T Chiang, Nathan E Lewis
- STAR Protoc, 10.1016/j.xpro.2023.102244
Preparing glycomics data for robust statistical analysis with GlyCompareCT
- Yujie Zhang, Sridevi Krishnan, Bokan Bao, …, Song-Min Schinn, Benjamin P Kellman, Nathan E Lewis
- STAR Protoc, 10.1016/j.xpro.2023.102162
ImmCellFie: A user-friendly web-based platform to infer metabolic function from omics data
- Helen O Masson, David Borland, Jason Reilly, …, Anne Richelle, Nathan E Lewis, Kimberly Robasky
- STAR Protoc, 10.1016/j.xpro.2023.102069
CHOGlycoNET: Comprehensive glycosylation reaction network for CHO cells
- Pavlos Kotidis, Roberto Donini, Johnny Arnsdorf, …, Nathan E Lewis, Frederick Krambeck, Cleo Kontoravdi
- Metab Eng, 10.1016/j.ymben.2022.12.009
An improved algorithm for flux variability analysis
- Dustin Kenefake, Erick Armingol, Nathan E Lewis, …, Erick Armingol, Nathan E Lewis, Efstratios N Pistikopoulos
- BMC Bioinformatics, 10.1186/s12859-022-05089-9
Inferring a spatial code of cell-cell interactions across a whole animal body
- Erick Armingol, Abbas Ghaddar, Chintan J Joshi, …, Olivia Yang, Eyleen J O’Rourke, Nathan E Lewis
- PLoS Comput Biol, 10.1371/journal.pcbi.1010715
A predictive ensemble classifier for the gene expression diagnosis of ASD at ages 1 to 4 years
- Bokan Bao, Javad Zahiri, Vahid H Gazestani, …, Evan E Eichler, Nathan E Lewis, Eric Courchesne
- Mol Psychiatry, 10.1038/s41380-022-01826-x
Simple and practical sialoglycan encoding system reveals vast diversity in nature and identifies a universal sialoglycan-recognizing probe derived from AB5 toxin B subunits
- Aniruddha Sasmal, Naazneen Khan, Zahra Khedri, …, Xi Chen, Nathan E Lewis, Ajit Varki
- Glycobiology, 10.1093/glycob/cwac057