Academic lineage
Robust reconstruction of single-cell RNA-seq data with iterative gene weight updates
- Yueqi Sheng, Boaz Barak, Mor Nitzan, …, Yueqi Sheng, Boaz Barak, Mor Nitzan
- Bioinformatics, 10.1093/bioinformatics/btad253
Emergence of division of labor in tissues through cell interactions and spatial cues
- Miri Adler, Noa Moriel, Aleksandrina Goeva, …, Aviv Regev, Ruslan Medzhitov, Mor Nitzan
- Cell Rep, 10.1016/j.celrep.2023.112412
scPrisma infers, filters and enhances topological signals in single-cell data using spectral template matching
- Jonathan Karin, Yonathan Bornfeld, Mor Nitzan
- Nat Biotechnol, 10.1038/s41587-023-01663-5
TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics
- Simon Mages, Noa Moriel, Inbal Avraham-Davidi, …, Johanna Klughammer, Aviv Regev, Mor Nitzan
- Nat Biotechnol, 10.1038/s41587-023-01657-3
Programming cell growth into different cluster shapes using diffusible signals
- Yipei Guo, Mor Nitzan, Michael P Brenner
- PLoS Comput Biol, 10.1371/journal.pcbi.1009576
Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram
- Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, …, Xiaowei Zhuang, Evan Z Macosko, Aviv Regev
- Nat Methods, 10.1038/s41592-021-01264-7
NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport
- Noa Moriel, Enes Senel, Nir Friedman, Nikolaus Rajewsky, Nikos Karaiskos, Mor Nitzan
- Nat Protoc, 10.1038/s41596-021-00573-7
Revealing lineage-related signals in single-cell gene expression using random matrix theory
- Mor Nitzan, Michael P Brenner
- Proc Natl Acad Sci U S A, 10.1073/pnas.1913931118
ChIP-seq of plasma cell-free nucleosomes identifies gene expression programs of the cells of origin
- Ronen Sadeh, Israa Sharkia, Gavriel Fialkoff, …, Aviad Zick, Yuval Dor, Nir Friedman
- Nat Biotechnol, 10.1038/s41587-020-00775-6
Selective flexible packaging pathways of the segmented genome of influenza A virus
- Ivan Haralampiev, Simon Prisner, Mor Nitzan, …, Oliver Seitz, Thorsten Wolff, Andreas Herrmann
- Nat Commun, 10.1038/s41467-020-18108-1