Enterococci enhance Clostridioides difficile pathogenesis
- Alexander B Smith, Matthew L Jenior, Orlaith Keenan, …, Boone M Prentice, Eric P Skaar, Joseph P Zackular
- Nature, 10.1038/s41586-022-05438-x
Genome-scale metabolic modeling reveals increased reliance on valine catabolism in clinical isolates of Klebsiella pneumoniae
- Matthew L Jenior, Mary E Dickenson, Jason A Papin
- NPJ Syst Biol Appl, 10.1038/s41540-022-00252-7
Quantifying cumulative phenotypic and genomic evidence for procedural generation of metabolic network reconstructions
- Thomas J Moutinho, Benjamin C Neubert, Matthew L Jenior, …, Benjamin C Neubert, Matthew L Jenior, Jason A Papin
- PLoS Comput Biol, 10.1371/journal.pcbi.1009341
Computational approaches to understanding Clostridioides difficile metabolism and virulence
- Matthew L Jenior, Jason A Papin, Matthew L Jenior, Jason A Papin
- Curr Opin Microbiol, 10.1016/j.mib.2021.11.002
Novel Drivers of Virulence in Clostridioides difficile Identified via Context-Specific Metabolic Network Analysis
- Matthew L Jenior, Jhansi L Leslie, Deborah A Powers, …, William A Petri, Rita Tamayo, Jason A Papin
- mSystems, 10.1128/msystems.00919-21
Multidimensional Clinical Surveillance of Pseudomonas aeruginosa Reveals Complex Relationships between Isolate Source, Morphology, and Antimicrobial Resistance
- Laura J Dunphy, Glynis L Kolling, Matthew L Jenior, …, Amy J Mathers, Molly A Hughes, Jason A Papin
- mSphere, 10.1128/msphere.00393-21
Protection from Lethal Clostridioides difficile Infection via Intraspecies Competition for Cogerminant
- Jhansi L Leslie, Matthew L Jenior, Kimberly C Vendrov, …, Ingrid L Bergin, Patrick D Schloss, Vincent B Young
- mBio, 10.1128/mbio.00522-21
Ten simple rules to increase computational skills among biologists with Code Clubs
- Ada K Hagan, Nicholas A Lesniak, Marcy J Balunas, …, Sarah Tomkovich, Begum D Topcuoglu, Patrick D Schloss
- PLoS Comput Biol, 10.1371/journal.pcbi.1008119
Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments
- Matthew L Jenior, Thomas J Moutinho, Bonnie V Dougherty, Jason A Papin
- PLoS Comput Biol, 10.1371/journal.pcbi.1007099