Academic lineage
Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types
- Cory C Funk, Alex M Casella, Segun Jung, …, Ravi Madduri, Nathan D Price, Seth A Ament
- Cell Rep, 10.1016/j.celrep.2020.108029
A synthesis of bacterial and archaeal phenotypic trait data
- Joshua S Madin, Daniel A Nielsen, Maria Brbic, …, Alice R Wattam, David A Westfall, Mark Westoby
- Sci Data, 10.1038/s41597-020-0497-4
Reproducible big data science: A case study in continuous FAIRness
- Ravi Madduri, Kyle Chard, Mike D’Arcy, …, Nathan Price, Carl Kesselman, Ian Foster
- PLoS One, 10.1371/journal.pone.0213013
ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions
- Brendan King, Terry Farrah, Matthew A Richards, Michael Mundy, Evangelos Simeonidis, Nathan D Price
- Bioinformatics, 10.1093/bioinformatics/btx796
Exploring Hydrogenotrophic Methanogenesis: a Genome Scale Metabolic Reconstruction of Methanococcus maripaludis
- Matthew A Richards, Thomas J Lie, Juan Zhang, Stephen W Ragsdale, John A Leigh, Nathan D Price
- J Bacteriol, 10.1128/jb.00571-16
MediaDB: a database of microbial growth conditions in defined media
- Matthew A Richards, Victor Cassen, Benjamin D Heavner, …, Andrea Herrmann, Evangelos Simeonidis, Nathan D Price
- PLoS One, 10.1371/journal.pone.0103548