BRAKER3: Fully Automated Genome Annotation Using RNA-Seq and Protein Evidence with GeneMark-ETP, AUGUSTUS and TSEBRA
- Lars Gabriel, Tomáš Brůna, Katharina J Hoff, …, Alexandre Lomsadze, Mark Borodovsky, Mario Stanke
- None, 10.1101/2023.06.10.544449
GeneMark-ETP: Automatic Gene Finding in Eukaryotic Genomes in Consistency with Extrinsic Data
- Tomas Bruna, Alexandre Lomsadze, Mark Borodovsky, …, Tomas Bruna, Alexandre Lomsadze, Mark Borodovsky
- None, 10.1101/2023.01.13.524024
StartLink and StartLink+: Prediction of Gene Starts in Prokaryotic Genomes
- Karl Gemayel, Alexandre Lomsadze, Mark Borodovsky
- None, 10.3389/fbinf.2021.704157
TSEBRA: transcript selector for BRAKER
- Lars Gabriel, Katharina J Hoff, Tomáš Brůna, Mark Borodovsky, Mario Stanke
- BMC Bioinformatics, 10.1186/s12859-021-04482-0
GeneMark-HM: improving gene prediction in DNA sequences of human microbiome
- Alexandre Lomsadze, Christophe Bonny, Francesco Strozzi, Mark Borodovsky
- None, 10.1093/nargab/lqab047
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
- Tomáš Brůna, Katharina J Hoff, Alexandre Lomsadze, Mario Stanke, Mark Borodovsky
- None, 10.1093/nargab/lqaa108
Disproportionate presence of adenosine in mitochondrial and chloroplast DNA of Chlamydomonas reinhardtii
- Waleed M M El-Sayed, Alli L Gombolay, Penghao Xu, …, Baek Kim, Yongsheng Chen, Francesca Storici
- None, 10.1016/j.isci.2020.102005
Bioinformatics Pipeline for Human Papillomavirus Short Read Genomic Sequences Classification Using Support Vector Machine
- Alexandre Lomsadze, Tengguo Li, Mangalathu S Rajeevan, Elizabeth R Unger, Mark Borodovsky
- Viruses, 10.3390/v12070710
GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins
- Tomáš Brůna, Alexandre Lomsadze, Mark Borodovsky
- None, 10.1093/nargab/lqaa026
Development of a workflow for identification of nuclear genotyping markers for Cyclospora cayetanensis
- Katelyn A Houghton, Alexandre Lomsadze, Subin Park, …, Eldin Talundzic, Mark Borodovsky, Yvonne Qvarnstrom
- Parasite, 10.1051/parasite/2020022