The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering
- Joan Hérisson, Thomas Duigou, Melchior du Lac, …, Manish Kushwaha, Geoff S Baldwin, Jean-Loup Faulon
- Nat Commun, 10.1038/s41467-022-32661-x
Cell-Free Protein Synthesis from Exonuclease-Deficient Cellular Extracts Utilizing Linear DNA Templates
- Mahnaz Sabeti Azad, Angelo Cardoso Batista, Jean-Loup Faulon, Chase L Beisel, Jerome Bonnet, Manish Kushwaha
- J Vis Exp, 10.3791/64236
PeroxiHUB: A Modular Cell-Free Biosensing Platform Using H 2 O 2 as Signal Integrator
- Paul Soudier, Ana Zúñiga, Thomas Duigou, …, Jerome Solassol, Jerome Bonnet, Jean-Loup Faulon
- ACS Synth Biol, 10.1021/acssynbio.2c00138
Toehold switch based biosensors for sensing the highly trafficked rosewood Dalbergia maritima
- Paul Soudier, Daniel Rodriguez Pinzon, Tristan Reif-Trauttmansdorff, …, Anna Niarakis, Manish Kushwaha, Ioana Grigoras
- None, 10.1016/j.synbio.2022.03.003
Differentially Optimized Cell-Free Buffer Enables Robust Expression from Unprotected Linear DNA in Exonuclease-Deficient Extracts
- Angelo Cardoso Batista, Antoine Levrier, Paul Soudier, …, Chase L Beisel, Jerome Bonnet, Manish Kushwaha
- ACS Synth Biol, 10.1021/acssynbio.1c00448
Comparative analysis of three studies measuring fluorescence from engineered bacterial genetic constructs
- Jacob Beal, Geoff S Baldwin, Natalie G Farny, …, Abigail Sison, Marko Storch, Christopher T Workman
- PLoS One, 10.1371/journal.pone.0252263
Engineered RNA-Interacting CRISPR Guide RNAs for Genetic Sensing and Diagnostics
- Roberto Galizi, John N Duncan, William Rostain, …, Marko Storch, Manish Kushwaha, Alfonso Jaramillo
- CRISPR J, 10.1089/crispr.2020.0029
Dynamic colocalization of 2 simultaneously active VSG expression sites within a single expression-site body in Trypanosoma brucei
- James Budzak, Louise E Kerry, Aris Aristodemou, …, Aakash Sur, Peter J Myler, Gloria Rudenko
- Proc Natl Acad Sci U S A, 10.1073/pnas.1905552116
Quantification of bacterial fluorescence using independent calibrants
- Jacob Beal, Traci Haddock-Angelli, Geoff Baldwin, …, Kim de Mora, Meagan Lizarazo, Randy Rettberg
- PLoS One, 10.1371/journal.pone.0199432
Using RNA as Molecular Code for Programming Cellular Function
- Manish Kushwaha, William Rostain, Satya Prakash, John N Duncan, Alfonso Jaramillo
- ACS Synth Biol, 10.1021/acssynbio.5b00297