Academic lineage
- Bernhard Ø Palsson - Ph.D. student
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models
- Zachary A King, Justin Lu, Andreas Dräger, …, Ali Ebrahim, Bernhard O Palsson, Nathan E Lewis
- Nucleic Acids Res, 10.1093/nar/gkv1049
Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale
- Joanne K Liu, Edward J O’Brien, Joshua A Lerman, Karsten Zengler, Bernhard O Palsson, Adam M Feist
- None, 10.1186/s12918-014-0110-6
Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
- Jonathan M Monk, Pep Charusanti, Ramy K Aziz, …, Jeffrey D Orth, Adam M Feist, Bernhard Ø Palsson
- Proc Natl Acad Sci U S A, 10.1073/pnas.1307797110
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
- Ali Ebrahim, Joshua A Lerman, Bernhard O Palsson, Daniel R Hyduke
- None, 10.1186/1752-0509-7-74
Network context and selection in the evolution to enzyme specificity
- Hojung Nam, Nathan E Lewis, Joshua A Lerman, …, Roger L Chang, Donghyuk Kim, Bernhard O Palsson
- Science, 10.1126/science.1216861
Raloxifene attenuates Pseudomonas aeruginosa pyocyanin production and virulence
- Shannan J Ho Sui, Raymond Lo, Aalton R Fernandes, …, Philip E Bourne, David L Baillie, Fiona S L Brinkman
- Int J Antimicrob Agents, 10.1016/j.ijantimicag.2012.05.009
In silico method for modelling metabolism and gene product expression at genome scale
- Joshua A Lerman, Daniel R Hyduke, Haythem Latif, …, Joshua N Adkins, Karsten Zengler, Bernhard O Palsson
- Nat Commun, 10.1038/ncomms1928
An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92
- Pep Charusanti, Sadhana Chauhan, Kathleen McAteer, …, Charles Ansong, Joshua N Adkins, Bernhard O Palsson
- None, 10.1186/1752-0509-5-163