Academic lineage
CyuR is a Dual Regulator for L-Cysteine Dependent Antimicrobial Resistance in Escherichia coli
- Irina A Rodionova, Hyun Gyu Lim, Dmitry A Rodionov, …, Ye Gao, Jonathan Monk, Bernhard O Palsson
- None, 10.1101/2023.05.16.541025
Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks
- Edward Alexander Catoiu, Patrick Phaneuf, Jonathan Monk, …, Patrick Phaneuf, Jonathan Monk, Bernhard O Palsson
- Proc Natl Acad Sci U S A, 10.1073/pnas.2218835120
Comprehensive whole genome sequencing with hybrid assembly of multi-drug resistant Candida albicans isolate causing cerebral abscess
- Monika Kumaraswamy, Alison Coady, Richard Szubin, …, Bernhard Palsson, Victor Nizet, Jonathan M Monk
- None, 10.1016/j.crmicr.2023.100180
High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917
- Max van ‘t Hof, Omkar S Mohite, Jonathan M Monk, …, Tilmann Weber, Bernhard O Palsson, Morten O A Sommer
- BMC Bioinformatics, 10.1186/s12859-022-05108-9
Historical biomonitoring of pollution trends in the North Pacific using archived samples from the Continuous Plankton Recorder Survey
- Kefeng Li, Jane C Naviaux, Sai Sachin Lingampelly, …, Clare Ostle, Sonia Batten, Robert K Naviaux
- Sci Total Environ, 10.1016/j.scitotenv.2022.161222
Metabolomic and exposomic biomarkers of risk of future neurodevelopmental delay in human milk
- Kefeng Li, Kerri Bertrand, Jane C Naviaux, …, Sai Sachin Lingampelly, Robert K Naviaux, Christina Chambers
- Pediatr Res, 10.1038/s41390-022-02283-6
Estimated Roles of the Carrier and the Bacterial Strain When Methicillin-Resistant Staphylococcus aureus Decolonization Fails: a Case-Control Study
- Mona Katrine Alberthe Holm, Kristina Melbardis Jørgensen, Kristian Bagge, …, Henrik Westh, Jonathan M Monk, Mette Damkjær Bartels
- Microbiol Spectr, 10.1128/spectrum.01296-22
Genome-scale metabolic network reconstructions of diverse Escherichia strains reveal strain-specific adaptations
- Jonathan M Monk
- Philos Trans R Soc Lond B Biol Sci, 10.1098/rstb.2021.0236
Cerebrospinal fluid and plasma metabolomics of acute endurance exercise
- Kefeng Li, Martin Schön, Jane C Naviaux, …, Mark A Tarnopolsky, Robert K Naviaux, Barbara Ukropcová
- FASEB J, 10.1096/fj.202200509r
Pangenome analysis of Enterobacteria reveals richness of secondary metabolite gene clusters and their associated gene sets
- Omkar S Mohite, Colton J Lloyd, Jonathan M Monk, Tilmann Weber, Bernhard O Palsson
- None, 10.1016/j.synbio.2022.04.011
Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity
- Jason C Hyun, Jonathan M Monk, Bernhard O Palsson
- BMC Genomics, 10.1186/s12864-021-08223-8