Guidelines for Microbiome Studies in Renal Physiology
- Rikeish R Muralitharan, Matthew Snelson, Guillaume Meric, …, Guillaume Meric, Melinda T Coughlan, Francine Z Marques
- Am J Physiol Renal Physiol, 10.1152/ajprenal.00072.2023
The gut microbiome is a significant risk factor for future chronic lung disease
- Yang Liu, Shu Mei Teo, Guillaume Meric, …, Rob Knight, Veikko Salomaa, Michael Inouye
- J Allergy Clin Immunol, 10.1016/j.jaci.2022.12.810
Genetic diversity and variation in antimicrobial-resistance determinants of non-serotype 2 Streptococcus suis isolates from healthy pigs
- Nattinee Kittiwan, Jessica K Calland, Evangelos Mourkas, …, Samuel K Sheppard, Prapas Patchanee, Ben Pascoe
- Microb Genom, 10.1099/mgen.0.000882
Spatiotemporal Investigation of Antibiotic Resistance in the Urban Water Cycle Influenced by Environmental and Anthropogenic Activity
- Keira Tucker, Leonardos Mageiros, Alno Carstens, …, Marelize Botes, Edward J Feil, Gideon Wolfaardt
- Microbiol Spectr, 10.1128/spectrum.02473-22
Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting
- Yang Liu, Guillaume Méric, Aki S Havulinna, …, Veikko Salomaa, Rob Knight, Michael Inouye
- Cell Metab, 10.1016/j.cmet.2022.03.002
Host ecology regulates interspecies recombination in bacteria of the genus Campylobacter
- Evangelos Mourkas, Koji Yahara, Sion C Bayliss, …, Jonas Waldenström, Ben Pascoe, Samuel K Sheppard
- Elife, 10.7554/elife.73552
The Carbon Footprint of Bioinformatics
- Jason Grealey, Loïc Lannelongue, Woei-Yuh Saw, …, Guillaume Méric, Sergio Ruiz-Carmona, Michael Inouye
- Mol Biol Evol, 10.1093/molbev/msac034
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort
- Youwen Qin, Aki S Havulinna, Yang Liu, …, Veikko Salomaa, Michael Inouye, Guillaume Méric
- Nat Genet, 10.1038/s41588-021-00991-z
Efficient computation of Faith’s phylogenetic diversity with applications in characterizing microbiomes
- George Armstrong, Kalen Cantrell, Shi Huang, …, Laxmi Parida, Yoshiki Vázquez-Baeza, Rob Knight
- Genome Res, 10.1101/gr.275777.121
Taxonomic signatures of cause-specific mortality risk in human gut microbiome
- Aaro Salosensaari, Ville Laitinen, Aki S Havulinna, …, Rob Knight, Leo Lahti, Teemu Niiranen
- Nat Commun, 10.1038/s41467-021-22962-y
Links between gut microbiome composition and fatty liver disease in a large population sample
- Matti O Ruuskanen, Fredrik Åberg, Ville Männistö, …, Rob Knight, Leo Lahti, Teemu J Niiranen
- Gut Microbes, 10.1080/19490976.2021.1888673
Genome evolution and the emergence of pathogenicity in avian Escherichia coli
- Leonardos Mageiros, Guillaume Méric, Sion C Bayliss, …, Nicola J Williams, Jukka Corander, Samuel K Sheppard
- Nat Commun, 10.1038/s41467-021-20988-w
Genomic epidemiology of Campylobacter jejuni associated with asymptomatic pediatric infection in the Peruvian Amazon
- Ben Pascoe, Francesca Schiaffino, Susan Murray, …, Maribel Paredes Olortegui, Margaret N Kosek, Samuel K Sheppard
- PLoS Negl Trop Dis, 10.1371/journal.pntd.0008533