Synthetic lethality in large-scale integrated metabolic and regulatory network models of human cells
- Naroa Barrena, Luis V Valcárcel, Danel Olaverri-Mendizabal, …, Danel Olaverri-Mendizabal, Iñigo Apaolaza, Francisco J Planes
- NPJ Syst Biol Appl, 10.1038/s41540-023-00296-3
Prediction of degradation pathways of phenolic compounds in the human gut microbiota through enzyme promiscuity methods
- Francesco Balzerani, Daniel Hinojosa-Nogueira, Xabier Cendoya, …, M Pilar Francino, José Ángel Rufián-Henares, Francisco J Planes
- NPJ Syst Biol Appl, 10.1038/s41540-022-00234-9
BOSO: A novel feature selection algorithm for linear regression with high-dimensional data
- Luis V Valcárcel, Edurne San José-Enériz, Xabier Cendoya, …, Xabier Agirre, Felipe Prósper, Francisco J Planes
- PLoS Comput Biol, 10.1371/journal.pcbi.1010180
The bone marrow niche regulates redox and energy balance in MLL::AF9 leukemia stem cells
- Ana C Viñado, Isabel A Calvo, Itziar Cenzano, …, Ana Pardo-Saganta, Felipe Prosper, Borja Saez
- Leukemia, 10.1038/s41375-022-01601-5
A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism
- Iñigo Apaolaza, Edurne San José-Enériz, Luis V Valcarcel, Xabier Agirre, Felipe Prosper, Francisco J Planes
- PLoS Comput Biol, 10.1371/journal.pcbi.1009395
Landscape and clinical significance of long noncoding RNAs involved in multiple myeloma expressed fusion transcripts
- Ane Amundarain, Luis V Valcárcel, Raquel Ordoñez, …, Francisco J Planes, Felipe Prósper, Xabier Agirre
- Am J Hematol, 10.1002/ajh.26450
An extended reconstruction of human gut microbiota metabolism of dietary compounds
- Telmo Blasco, Sergio Pérez-Burillo, Francesco Balzerani, …, Iñigo Apaolaza, José Ángel Rufián-Henares, Francisco J Planes
- Nat Commun, 10.1038/s41467-021-25056-x
Effect of Freezing on Gut Microbiota Composition and Functionality for In Vitro Fermentation Experiments
- Sergio Pérez-Burillo, Daniel Hinojosa-Nogueira, Beatriz Navajas-Porras, …, Francisco J Planes, Maria Pilar Francino, José Ángel Rufián-Henares
- Nutrients, 10.3390/nu13072207
Gene expression derived from alternative promoters improves prognostic stratification in multiple myeloma
- Luis V Valcárcel, Ane Amundarain, Marta Kulis, …, Francisco J Planes, Xabier Agirre, Felipe Prosper
- Leukemia, 10.1038/s41375-021-01263-9
Characterization of complete lncRNAs transcriptome reveals the functional and clinical impact of lncRNAs in multiple myeloma
- Arantxa Carrasco-Leon, Teresa Ezponda, Cem Meydan, …, Ari Melnick, Felipe Prosper, Xabier Agirre
- Leukemia, 10.1038/s41375-021-01147-y
DrugSniper, a Tool to Exploit Loss-Of-Function Screens, Identifies CREBBP as a Predictive Biomarker of VOLASERTIB in Small Cell Lung Carcinoma (SCLC)
- Fernando Carazo, Cristina Bértolo, Carlos Castilla, …, Ruben Pio, Luis M Montuenga, Angel Rubio
- None, 10.3390/cancers12071824
Computational approach for collection and prediction of molecular initiating events in developmental toxicity
- Xabier Cendoya, Celia Quevedo, Maitane Ipiñazar, Francisco J Planes
- Reprod Toxicol, 10.1016/j.reprotox.2020.03.010
On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models
- Miguel Ponce-de-León, Iñigo Apaolaza, Alfonso Valencia, Francisco J Planes
- Bioinformatics, 10.1093/bioinformatics/btz832