SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
- Claudine Chaouiya, Duncan Bérenguier, Sarah M Keating, …, Nicolas Le Novère, Julio Saez-Rodriguez, Tomáš Helikar
- None, 10.1186/1752-0509-7-135
Integrative pathway-based approach for genome-wide association studies: identification of new pathways for rheumatoid arthritis and type 1 diabetes
- Finja Büchel, Florian Mittag, Clemens Wrzodek, Andreas Zell, Thomas Gasser, Manu Sharma
- PLoS One, 10.1371/journal.pone.0078577
Loss of mitochondrial peptidase Clpp leads to infertility, hearing loss plus growth retardation via accumulation of CLPX, mtDNA and inflammatory factors
- Suzana Gispert, Dajana Parganlija, Michael Klinkenberg, …, Heinz D Osiewacz, Marina Jendrach, Georg Auburger
- Hum Mol Genet, 10.1093/hmg/ddt338
Precise generation of systems biology models from KEGG pathways
- Clemens Wrzodek, Finja Büchel, Manuel Ruff, Andreas Dräger, Andreas Zell
- None, 10.1186/1752-0509-7-15
InCroMAP: integrated analysis of cross-platform microarray and pathway data
- Clemens Wrzodek, Johannes Eichner, Finja Büchel, Andreas Zell
- Bioinformatics, 10.1093/bioinformatics/bts709
A pathway-based analysis provides additional support for an immune-related genetic susceptibility to Parkinson’s disease
- Peter Holmans, Valentina Moskvina, Lesley Jones, …, John Hardy, Huw R Morris, Nigel M Williams
- Hum Mol Genet, 10.1093/hmg/dds492
Qualitative translation of relations from BioPAX to SBML qual
- Finja Büchel, Clemens Wrzodek, Florian Mittag, …, Nicolas Rodriguez, Nicolas Le Novère, Andreas Zell
- Bioinformatics, 10.1093/bioinformatics/bts508
Linking the epigenome to the genome: correlation of different features to DNA methylation of CpG islands
- Clemens Wrzodek, Finja Büchel, Georg Hinselmann, Johannes Eichner, Florian Mittag, Andreas Zell
- PLoS One, 10.1371/journal.pone.0035327