Phylodynamics of a regional SARS-CoV-2 rapid spreading event in Colorado in late 2020
- Kristen J Wade, Samantha Tisa, Chloe Barrington, …, Erin A Almand, David D Pollock, Olivia S Rissland
- PLoS One, 10.1371/journal.pone.0274050
Integrating genomic and epidemiologic data to accelerate progress toward schistosomiasis elimination
- Andrea J Lund, Kristen J Wade, Zachary L Nikolakis, …, Todd A Castoe, David D Pollock, Elizabeth J Carlton
- Elife, 10.7554/elife.79320
Author Correction: SARS-CoV-2 evolution during treatment of chronic infection
- Steven A Kemp, Dami A Collier, Rawlings P Datir, …, Christopher J R Illingworth, Laura E McCoy, Ravindra K Gupta
- Nature, 10.1038/s41586-022-05104-2
Selection for cooperativity causes epistasis predominately between native contacts and enables epistasis-based structure reconstruction
- R Charlotte Eccleston, David D Pollock, Richard A Goldstein
- Proc Natl Acad Sci U S A, 10.1073/pnas.2010057118
Population genomic analyses of schistosome parasites highlight critical challenges facing endgame elimination efforts
- Jonathan A Shortt, Laura E Timm, Nicole R Hales, …, Todd A Castoe, Elizabeth J Carlton, David D Pollock
- Sci Rep, 10.1038/s41598-021-86287-y
SARS-CoV-2 evolution during treatment of chronic infection
- Steven A Kemp, Dami A Collier, Rawlings P Datir, …, Christopher J R Illingworth, Laura E McCoy, Ravindra K Gupta
- Nature, 10.1038/s41586-021-03291-y
Patterns of relatedness and genetic diversity inferred from whole genome sequencing of archival blood fluke miracidia (Schistosoma japonicum)
- Zachary L Nikolakis, Nicole R Hales, Blair W Perry, …, Elizabeth J Carlton, David D Pollock, Todd A Castoe
- PLoS Negl Trop Dis, 10.1371/journal.pntd.0009020
Neutralising antibodies in Spike mediated SARS-CoV-2 adaptation
- S A Kemp, D A Collier, R Datir, …, Cjr Illingworth, L E McCoy, R K Gupta
- None, 10.1101/2020.12.05.20241927
Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution
- Kenji Fukushima, David D Pollock
- Nat Commun, 10.1038/s41467-020-18090-8
Viral CpG Deficiency Provides No Evidence That Dogs Were Intermediate Hosts for SARS-CoV-2
- David D Pollock, Todd A Castoe, Blair W Perry, …, James L N Wood, Pleuni S Pennings, Richard A Goldstein
- Mol Biol Evol, 10.1093/molbev/msaa178
Finding and extending ancient simple sequence repeat-derived regions in the human genome
- Jonathan A Shortt, Robert P Ruggiero, Corey Cox, Aaron C Wacholder, David D Pollock
- None, 10.1186/s13100-020-00206-y