Academic lineage
- Bernhard Ø Palsson - Postdoctoral Associate
TGx-DDI, a Transcriptomic Biomarker for Genotoxicity Hazard Assessment of Pharmaceuticals and Environmental Chemicals
- Heng-Hong Li, Carole L Yauk, Renxiang Chen, …, Syril Pettit, Jiri Aubrecht, Albert J Fornace
- None, 10.3389/fdata.2019.00036
Development and validation of a high-throughput transcriptomic biomarker to address 21st century genetic toxicology needs
- Heng-Hong Li, Renxiang Chen, Daniel R Hyduke, …, Carole L Yauk, Jiri Aubrecht, Albert J Fornace
- Proc Natl Acad Sci U S A, 10.1073/pnas.1714109114
A predictive toxicogenomics signature to classify genotoxic versus non-genotoxic chemicals in human TK6 cells
- Andrew Williams, Julie K Buick, Ivy Moffat, …, Albert J Fornace, Jiri Aubrecht, Carole L Yauk
- None, 10.1016/j.dib.2015.08.013
A systems approach to predict oncometabolites via context-specific genome-scale metabolic networks
- Hojung Nam, Miguel Campodonico, Aarash Bordbar, …, Sangwoo Kim, Daniel C Zielinski, Bernhard O Palsson
- PLoS Comput Biol, 10.1371/journal.pcbi.1003837
GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data
- Brian J Schmidt, Ali Ebrahim, Thomas O Metz, Joshua N Adkins, Bernhard Ø Palsson, Daniel R Hyduke
- Bioinformatics, 10.1093/bioinformatics/btt493
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
- Ali Ebrahim, Joshua A Lerman, Bernhard O Palsson, Daniel R Hyduke
- None, 10.1186/1752-0509-7-74
Identifying radiation exposure biomarkers from mouse blood transcriptome
- Daniel R Hyduke, Evagelia C Laiakis, Heng-Hong Li, Albert J Fornace
- None, 10.1504/ijbra.2013.054701
Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes
- Young-Mo Kim, Brian J Schmidt, Afshan S Kidwai, …, Daniel R Hyduke, Thomas O Metz, Joshua N Adkins
- None, 10.1039/c3mb25598k