ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis
- Michael Römer, Johannes Eichner, Andreas Dräger, Clemens Wrzodek, Finja Wrzodek, Andreas Zell
- PLoS One, 10.1371/journal.pone.0149263
JSBML 1.0: providing a smorgasbord of options to encode systems biology models
- Nicolas Rodriguez, Alex Thomas, Leandro Watanabe, …, Bernhard Ø Palsson, Michael Hucka, Andreas Dräger
- Bioinformatics, 10.1093/bioinformatics/btv341
Evaluation of toxicogenomics approaches for assessing the risk of nongenotoxic carcinogenicity in rat liver
- Johannes Eichner, Clemens Wrzodek, Michael Römer, Heidrun Ellinger-Ziegelbauer, Andreas Zell
- PLoS One, 10.1371/journal.pone.0097678
Integrated enrichment analysis and pathway-centered visualization of metabolomics, proteomics, transcriptomics, and genomics data by using the InCroMAP software
- Johannes Eichner, Lars Rosenbaum, Clemens Wrzodek, Hans-Ulrich Häring, Andreas Zell, Rainer Lehmann
- J Chromatogr B Analyt Technol Biomed Life Sci, 10.1016/j.jchromb.2014.04.030
TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors
- Johannes Eichner, Florian Topf, Andreas Dräger, Clemens Wrzodek, Dierk Wanke, Andreas Zell
- PLoS One, 10.1371/journal.pone.0082238
Path2Models: large-scale generation of computational models from biochemical pathway maps
- Finja Büchel, Nicolas Rodriguez, Neil Swainston, …, Camille Laibe, Andreas Dräger, Nicolas Le Novère
- None, 10.1186/1752-0509-7-116
A toxicogenomic approach for the prediction of murine hepatocarcinogenesis using ensemble feature selection
- Johannes Eichner, Nadine Kossler, Clemens Wrzodek, …, Nina Ostenfeldt, Virgile Richard, Andreas Zell
- PLoS One, 10.1371/journal.pone.0073938
InCroMAP: integrated analysis of cross-platform microarray and pathway data
- Clemens Wrzodek, Johannes Eichner, Finja Büchel, Andreas Zell
- Bioinformatics, 10.1093/bioinformatics/bts709
Identification of Dlk1-Dio3 imprinted gene cluster noncoding RNAs as novel candidate biomarkers for liver tumor promotion
- Harri Lempiäinen, Philippe Couttet, Federico Bolognani, …, Pierre Moulin, Rémi Terranova, Jonathan G Moggs
- Toxicol Sci, 10.1093/toxsci/kfs303
Pathway-based visualization of cross-platform microarray datasets
- Clemens Wrzodek, Johannes Eichner, Andreas Zell
- Bioinformatics, 10.1093/bioinformatics/bts583