Highly host-linked viromes in the built environment possess habitat-dependent diversity and functions for potential virus-host coevolution
- Shicong Du, Xinzhao Tong, Alvin C K Lai, …, Chak K Chan, Christopher E Mason, Patrick K H Lee
- Nat Commun, 10.1038/s41467-023-38400-0
A modular metagenomics analysis system for integrated multi-step data exploration
- Lauren Mak, Braden Tierney, Cynthia Ronkowski, …, Shuiquan Tang, Christopher Mason, Iman Hajirasouliha
- None, 10.1101/2023.04.09.536171
Cooperative super-enhancer inactivation caused by heterozygous loss of CREBBP and KMT2D skews B cell fate decisions and yields T cell-depleted lymphomas
- Jie Li, Christopher R Chin, Hsia-Yuan Ying, …, Christopher E Mason, Wendy Béguelin, Ari M Melnick
- None, 10.1101/2023.02.13.528351
IDH2 and TET2 mutations synergize to modulate T Follicular Helper cell functional interaction with the AITL microenvironment
- Julie Leca, Franҫois Lemonnier, Cem Meydan, …, Ari Melnick, Philippe Gaulard, Tak W Mak
- Cancer Cell, 10.1016/j.ccell.2023.01.003
Ozone Disinfection for Elimination of Bacteria and Degradation of SARS-CoV2 RNA for Medical Environments
- Craig Westover, Savlatjon Rahmatulloev, David Danko, …, Rachid Ounit, Daniela Bezdan, Christopher E Mason
- Genes (Basel), 10.3390/genes14010085
Distinct and opposite effects of leukemogenic Idh and Tet2 mutations in hematopoietic stem and progenitor cells
- Jerome Fortin, Ming-Feng Chiang, Cem Meydan, …, Ari M Melnick, Christopher E Mason, Tak W Mak
- Proc Natl Acad Sci U S A, 10.1073/pnas.2208176120
Degradation rates influence the ability of composite samples to represent 24-hourly means of SARS-CoV-2 and other microbiological target measures in wastewater
- Kristina M Babler, Mark E Sharkey, Samantha Abelson, …, Dusica Vidović, Yalda Zarnegarnia, Helena M Solo-Gabriele
- Sci Total Environ, 10.1016/j.scitotenv.2023.161423
The Maleth program: Malta’s first space mission discoveries on the microbiome of diabetic foot ulcers
- Christine Gatt, Braden T Tierney, Pedro Madrigal, …, Jurgen Bonett, Kevin Cassar, Joseph Borg
- None, 10.1016/j.heliyon.2022.e12075
Microbiome and metagenomic analysis of Lake Hillier Australia reveals pigment-rich polyextremophiles and wide-ranging metabolic adaptations
- Maria A Sierra, Krista A Ryon, Braden T Tierney, …, Ken McGrath, Christopher E Mason, Scott W Tighe
- Microbiome, 10.1186/s40793-022-00455-9
Urban Microbiomes in Narita, Chiba, Japan: Shotgun Metagenome Sequences of a Train Station
- Dewa A P Rasmika Dewi, Yuh Shiwa, Krista Ryon, …, Christopher E Mason, Tetsuya Matsumoto, Haruo Suzuki
- None, 10.1128/mra.01092-22
Spatial omics technologies at multimodal and single cell/subcellular level
- Jiwoon Park, Junbum Kim, Tyler Lewy, …, Olivier Elemento, André F Rendeiro, Christopher E Mason
- Genome Biol, 10.1186/s13059-022-02824-6
Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies
- Keyur Talsania, Tsai-Wei Shen, Xiongfong Chen, …, Charles Wang, Wenming Xiao, Yongmei Zhao
- Genome Biol, 10.1186/s13059-022-02816-6
Multidrug-resistant Acinetobacter pittii is adapting to and exhibiting potential succession aboard the International Space Station
- Braden T Tierney, Nitin K Singh, Anna C Simpson, …, Robert A Bonomo, Christopher E Mason, Kasthuri Venkateswaran
- Microbiome, 10.1186/s40168-022-01358-0
Human microbiota drives hospital-associated antimicrobial resistance dissemination in the urban environment and mirrors patient case rates
- Cecilia Salazar, Matias Giménez, Nadia Riera, …, Bruno D’Alessandro, Jimena Risso, Gregorio Iraola
- Microbiome, 10.1186/s40168-022-01407-8
Functional response to a microbial synbiotic in the gastrointestinal system of children: a randomized clinical trial
- Braden T Tierney, James Versalovic, Alessio Fasano, …, Gregor Reid, Raja Dhir, Christopher E Mason
- Pediatr Res, 10.1038/s41390-022-02289-0
A history of the MetaSUB consortium: Tracking urban microbes around the globe
- Krista A Ryon, Braden T Tierney, Alina Frolova, …, Xavier Rodo, Zehra Hazal Sezer, Christopher E Mason
- None, 10.1016/j.isci.2022.104993
An Aged/Autoimmune B-cell Program Defines the Early Transformation of Extranodal Lymphomas
- Leandro Venturutti, Martin A Rivas, Benedikt W Pelzer, …, Alessandra B Pernis, Wendy Béguelin, Ari M Melnick
- Cancer Discov, 10.1158/2159-8290.cd-22-0561
Predicting COVID-19 cases using SARS-CoV-2 RNA in air, surface swab and wastewater samples
- Helena M Solo-Gabriele, Shelja Kumar, Samantha Abelson, …, Dushyantha T Jayaweera, Mehdi Mirsaeidi, Naresh Kumar
- Sci Total Environ, 10.1016/j.scitotenv.2022.159188
IL-6/STAT3 axis dictates the PNPLA3-mediated susceptibility to non-alcoholic fatty liver disease
- Jiwoon Park, Yuanyuan Zhao, Fan Zhang, …, Jae U Jung, Charles M Rice, Xianfang Wu
- J Hepatol, 10.1016/j.jhep.2022.08.022
Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples
- Yifan Zhang, Thomas M Blomquist, Rebecca Kusko, …, Weida Tong, James C Willey, Joshua Xu
- Genome Biol, 10.1186/s13059-022-02709-8
Genome-wide promoter methylation profiling in a cellular model of melanoma progression reveals markers of malignancy and metastasis that predict melanoma survival
- Flávia E Rius, Debora D Papaiz, Hatylas F Z Azevedo, …, Eduardo M Reis, Christopher E Mason, Miriam G Jasiulionis
- Clin Epigenetics, 10.1186/s13148-022-01291-x
Genomic Characterization of Parengyodontium torokii sp. nov., a Biofilm-Forming Fungus Isolated from Mars 2020 Assembly Facility
- Ceth W Parker, Marcus de Melo Teixeira, Nitin K Singh, …, Jason E Stajich, Christopher E Mason, Kasthuri Venkateswaran
- None, 10.3390/jof8010066
Author Correction: The SEQC2 epigenomics quality control (EpiQC) study
- Jonathan Foox, Jessica Nordlund, Claudia Lalancette, …, Yunliang Wang, Youping Deng, Christopher E Mason
- Genome Biol, 10.1186/s13059-021-02573-y
Viral Dynamics of SARS-CoV-2 Variants in Vaccinated and Unvaccinated Persons
- Stephen M Kissler, Joseph R Fauver, Christina Mack, …, David D Ho, Nathan D Grubaugh, Yonatan H Grad
- N Engl J Med, 10.1056/nejmc2102507
Systems biology analysis of human genomes points to key pathways conferring spina bifida risk
- Vanessa Aguiar-Pulido, Paul Wolujewicz, Alexander Martinez-Fundichely, …, Olivier Elemento, Richard H Finnell, M Elizabeth Ross
- Proc Natl Acad Sci U S A, 10.1073/pnas.2106844118
The Sequencing Quality Control 2 study: establishing community standards for sequencing in precision medicine
- Tim R Mercer, Joshua Xu, Christopher E Mason, Weida Tong
- Genome Biol, 10.1186/s13059-021-02528-3
Lessons learned from SARS-CoV-2 measurements in wastewater
- Mark E Sharkey, Naresh Kumar, Alejandro M A Mantero, …, Sion L Williams, Benjamin Young, Helena M Solo-Gabriele
- Sci Total Environ, 10.1016/j.scitotenv.2021.149177
Diurnal variation in the human skin microbiome affects accuracy of forensic microbiome matching
- David Wilkins, Xinzhao Tong, Marcus H Y Leung, Christopher E Mason, Patrick K H Lee
- Microbiome, 10.1186/s40168-021-01082-1
Characterization of the public transit air microbiome and resistome reveals geographical specificity
- M H Y Leung, X Tong, K O Bøifot, …, C E Mason, M Dybwad, P K H Lee
- Microbiome, 10.1186/s40168-021-01044-7
The impact of cross-kingdom molecular forensics on genetic privacy
- Eran Elhaik, Sofia Ahsanuddin, Jake M Robinson, Emily M Foster, Christopher E Mason
- Microbiome, 10.1186/s40168-021-01076-z
A comprehensive metagenomics framework to characterize organisms relevant for planetary protection
- David C Danko, Maria A Sierra, James N Benardini, …, Chandrima Bhattacharya, Kasthuri J Venkateswaran, Christopher E Mason
- Microbiome, 10.1186/s40168-021-01020-1
