Experimental Data Connector (XDC): Integrating the Capture of Experimental Data and Metadata Using Standard Formats and Digital Repositories
- Sai P Samineni, Gonzalo Vidal, Carlos Vidal-Céspedes, …, Timothy J Rudge, Chris J Myers, Jeanet Mante
- ACS Synth Biol, 10.1021/acssynbio.2c00669
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022
- Matthias König, Padraig Gleeson, Martin Golebiewski, …, Björn Sommer, Dagmar Waltemath, Falk Schreiber
- J Integr Bioinform, 10.1515/jib-2023-0004
SynBioSuite: A Tool for Improving the Workflow for Genetic Design and Modeling
- Zachary Sents, Thomas E Stoughton, Lukas Buecherl, …, Payton J Thomas, Pedro Fontanarrosa, Chris J Myers
- ACS Synth Biol, 10.1021/acssynbio.2c00597
A Comparison of Weighted Stochastic Simulation Methods for the Analysis of Genetic Circuits
- Mohammad Ahmadi, Payton J Thomas, Lukas Buecherl, …, Chris Winstead, Chris J Myers, Hao Zheng
- ACS Synth Biol, 10.1021/acssynbio.2c00553
Highly-automated, high-throughput replication of yeast-based logic circuit design assessments
- Robert P Goldman, Robert Moseley, Nicholas Roehner, …, Benjamin Hatch, James Scholz, John Colonna-Romano
- None, 10.1093/synbio/ysac018
Engineering genetic circuits: advancements in genetic design automation tools and standards for synthetic biology
- Lukas Buecherl, Chris J Myers
- Curr Opin Microbiol, 10.1016/j.mib.2022.102155
BioSimulators: a central registry of simulation engines and services for recommending specific tools
- Bilal Shaikh, Lucian P Smith, Dan Vasilescu, …, Herbert M Sauro, Ion I Moraru, Jonathan R Karr
- Nucleic Acids Res, 10.1093/nar/gkac331
Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis
- Daniel Bryce, Robert P Goldman, Matthew DeHaven, …, Anastasia Deckard, Bree Cummins, Nick Leiby
- ACS Synth Biol, 10.1021/acssynbio.1c00305
Sequence-Based Searching for SynBioHub Using VSEARCH
- Eric Yu, Jeanet Mante, Chris J Myers
- ACS Synth Biol, 10.1021/acssynbio.1c00145
Synthetic Biology Curation Tools (SYNBICT)
- Nicholas Roehner, Jeanet Mante, Chris J Myers, Jacob Beal
- ACS Synth Biol, 10.1021/acssynbio.1c00220