Academic lineage
Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO 2 through geologic time should be reevaluated
- Renée Z Wang, Robert J Nichols, Albert K Liu, …, John M Eiler, Patrick M Shih, Woodward W Fischer
- Proc Natl Acad Sci U S A, 10.1073/pnas.2300466120
Competing constraints shape the nonequilibrium limits of cellular decision-making
- Nicholas C Lammers, Avi I Flamholz, Hernan G Garcia, …, Nicholas C Lammers, Avi I Flamholz, Hernan G Garcia
- Proc Natl Acad Sci U S A, 10.1073/pnas.2211203120
Optical O 2 Sensors Also Respond to Redox Active Molecules Commonly Secreted by Bacteria
- Avi I Flamholz, Samuel Saccomano, Kevin Cash, …, Samuel Saccomano, Kevin Cash, Dianne K Newman
- mBio, 10.1128/mbio.02076-22
Uniform binding and negative catalysis at the origin of enzymes
- Elad Noor, Avi I Flamholz, Vijay Jayaraman, …, Wayne M Patrick, Ita Gruic-Sovulj, Dan S Tawfik
- Protein Sci, 10.1002/pro.4381
Microbial communities: The metabolic rate is the trait
- Avi I Flamholz, Dianne K Newman
- Curr Biol, 10.1016/j.cub.2022.02.002
eQuilibrator 3.0: a database solution for thermodynamic constant estimation
- Moritz E Beber, Mattia G Gollub, Dana Mozaffari, …, Avi I Flamholz, Ron Milo, Elad Noor
- Nucleic Acids Res, 10.1093/nar/gkab1106
Tools for interpretation of wastewater SARS-CoV-2 temporal and spatial trends demonstrated with data collected in the San Francisco Bay Area
- Hannah D Greenwald, Lauren C Kennedy, Adrian Hinkle, …, Eileen White, Rose Kantor, Kara L Nelson
- None, 10.1016/j.wroa.2021.100111
The total number and mass of SARS-CoV-2 virions
- Ron Sender, Yinon M Bar-On, Shmuel Gleizer, …, Avi Flamholz, Rob Phillips, Ron Milo
- Proc Natl Acad Sci U S A, 10.1073/pnas.2024815118
Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants
- Alexander Crits-Christoph, Rose S Kantor, Matthew R Olm, …, Scott Kuersten, Jillian F Banfield, Kara L Nelson
- mBio, 10.1128/mbio.02703-20
Functional reconstitution of a bacterial CO 2 concentrating mechanism in Escherichia coli
- Avi I Flamholz, Eli Dugan, Cecilia Blikstad, …, Arren Bar-Even, Ron Milo, David F Savage
- Elife, 10.7554/elife.59882
Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle
- Nico J Claassens, Giovanni Scarinci, Axel Fischer, …, Stefan Frielingsdorf, Oliver Lenz, Arren Bar-Even
- Proc Natl Acad Sci U S A, 10.1073/pnas.2012288117
Highly active rubiscos discovered by systematic interrogation of natural sequence diversity
- Dan Davidi, Melina Shamshoum, Zhijun Guo, …, Itai Sharon, Oliver Mueller-Cajar, Ron Milo
- EMBO J, 10.15252/embj.2019104081
Cell biology of photosynthesis over geologic time
- Avi Flamholz, Patrick M Shih
- Curr Biol, 10.1016/j.cub.2020.01.076
SARS-CoV-2 (COVID-19) by the numbers
- Yinon M Bar-On, Avi Flamholz, Rob Phillips, Ron Milo
- Elife, 10.7554/elife.57309