GA4GH: International policies and standards for data sharing across genomic research and healthcare
- Heidi L Rehm, Angela J H Page, Lindsay Smith, …, Peter Goodhand, Kathryn North, Ewan Birney
- None, 10.1016/j.xgen.2021.100029
SeqRepo: A system for managing local collections of biological sequences
- Reece K Hart, Andreas Prlić
- PLoS One, 10.1371/journal.pone.0239883
Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm
- Spencer E Bliven, Aleix Lafita, Peter W Rose, Guido Capitani, Andreas Prlić, Philip E Bourne
- PLoS Comput Biol, 10.1371/journal.pcbi.1006842
BioJava 5: A community driven open-source bioinformatics library
- Aleix Lafita, Spencer Bliven, Andreas Prlić, …, Matt Larson, Stephen K Burley, Jose M Duarte
- PLoS Comput Biol, 10.1371/journal.pcbi.1006791
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
- Stephen K Burley, Helen M Berman, Charmi Bhikadiya, …, Jasmine Young, Marina Zhuravleva, Christine Zardecki
- Nucleic Acids Res, 10.1093/nar/gky1004
hgvs: A Python package for manipulating sequence variants using HGVS nomenclature: 2018 Update
- Meng Wang, Keith M Callenberg, Raymond Dalgleish, …, Andreas Prlić, Veena Rajaraman, Reece K Hart
- Hum Mutat, 10.1002/humu.23615
Recon3D enables a three-dimensional view of gene variation in human metabolism
- Elizabeth Brunk, Swagatika Sahoo, Daniel C Zielinski, …, Jens Nielsen, Ines Thiele, Bernhard O Palsson
- Nat Biotechnol, 10.1038/nbt.4072
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework
- Gustavo Glusman, Peter W Rose, Andreas Prlić, …, Yana Valasatava, Yang Zhang, Eric W Deutsch
- Genome Med, 10.1186/s13073-017-0509-y
Towards an efficient compression of 3D coordinates of macromolecular structures
- Yana Valasatava, Anthony R Bradley, Alexander S Rose, Jose M Duarte, Andreas Prlić, Peter W Rose
- PLoS One, 10.1371/journal.pone.0174846
BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank
- Jianjiong Gao, Andreas Prlic, Chunxiao Bi, …, Dong Xu, Philip E Bourne, Peter W Rose
- Bioinformatics, 10.1093/bioinformatics/btx101
Impact of genetic variation on three dimensional structure and function of proteins
- Roshni Bhattacharya, Peter W Rose, Stephen K Burley, Andreas Prlić
- PLoS One, 10.1371/journal.pone.0171355
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
- Peter W Rose, Andreas Prlić, Chunxiao Bi, …, Helen M Berman, Philip E Bourne, Stephen K Burley
- Nucleic Acids Res, 10.1093/nar/gku1214