Reply to Hedrick and Klitz: High haplotype discovery rate in the HLA locus
- Yoram Louzoun, Alexander E Lobkovsky, Lee Levi, …, Loren Gragert, Idan Alter, Eugene V Koonin
- Proc Natl Acad Sci U S A, 10.1073/pnas.1916124116
Multiplicative fitness, rapid haplotype discovery, and fitness decay explain evolution of human MHC
- Alexander E Lobkovsky, Lee Levi, Yuri I Wolf, …, Idan Alter, Yoram Louzoun, Eugene V Koonin
- Proc Natl Acad Sci U S A, 10.1073/pnas.1714436116
The Placental Atlas Tool (PAT): A collaborative research and discovery platform for the placental research community
- John V Ilekis, Michael Keller, Alexandra Shlionskaya, …, Alexander Lobkovsky Meitiv, Bryan Gorman, Archana Mohale
- Placenta, 10.1016/j.placenta.2019.03.016
Two fundamentally different classes of microbial genes
- Yuri I Wolf, Kira S Makarova, Alexander E Lobkovsky, Eugene V Koonin
- Nat Microbiol, 10.1038/nmicrobiol.2016.208
Inevitability of Genetic Parasites
- Jaime Iranzo, Pere Puigbò, Alexander E Lobkovsky, Yuri I Wolf, Eugene V Koonin
- Genome Biol Evol, 10.1093/gbe/evw193
The diversity-generating benefits of a prokaryotic adaptive immune system
- Stineke van Houte, Alice K E Ekroth, Jenny M Broniewski, …, Steve Paterson, Angus Buckling, Edze R Westra
- Nature, 10.1038/nature17436
Evolvability of an Optimal Recombination Rate
- Alexander E Lobkovsky, Yuri I Wolf, Eugene V Koonin
- Genome Biol Evol, 10.1093/gbe/evv249
Estimation of prokaryotic supergenome size and composition from gene frequency distributions
- Alexander E Lobkovsky, Yuri I Wolf, Eugene V Koonin
- BMC Genomics, 10.1186/1471-2164-15-s6-s14
Virus-host arms race at the joint origin of multicellularity and programmed cell death
- Jaime Iranzo, Alexander E Lobkovsky, Yuri I Wolf, Eugene V Koonin
- Cell Cycle, 10.4161/15384101.2014.949496
Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes
- Pere Puigbò, Alexander E Lobkovsky, David M Kristensen, Yuri I Wolf, Eugene V Koonin
- BMC Biol, 10.1186/s12915-014-0066-4
Evolutionary dynamics of the prokaryotic adaptive immunity system CRISPR-Cas in an explicit ecological context
- Jaime Iranzo, Alexander E Lobkovsky, Yuri I Wolf, Eugene V Koonin
- J Bacteriol, 10.1128/jb.00412-13
The vast, conserved mammalian lincRNome
- David Managadze, Alexander E Lobkovsky, Yuri I Wolf, Svetlana A Shabalina, Igor B Rogozin, Eugene V Koonin
- PLoS Comput Biol, 10.1371/journal.pcbi.1002917
Quantifying the similarity of monotonic trajectories in rough and smooth fitness landscapes
- Alexander E Lobkovsky, Yuri I Wolf, Eugene V Koonin
- None, 10.1039/c3mb25553k
Gene frequency distributions reject a neutral model of genome evolution
- Alexander E Lobkovsky, Yuri I Wolf, Eugene V Koonin
- Genome Biol Evol, 10.1093/gbe/evt002
Viral diversity threshold for adaptive immunity in prokaryotes
- Ariel D Weinberger, Yuri I Wolf, Alexander E Lobkovsky, Michael S Gilmore, Eugene V Koonin
- mBio, 10.1128/mbio.00456-12
Replaying the tape of life: quantification of the predictability of evolution
- Alexander E Lobkovsky, Eugene V Koonin, Alexander E Lobkovsky, Eugene V Koonin, Alexander E Lobkovsky, Eugene V Koonin
- None, 10.3389/fgene.2012.00246
Predictability of evolutionary trajectories in fitness landscapes
- Alexander E Lobkovsky, Yuri I Wolf, Eugene V Koonin
- PLoS Comput Biol, 10.1371/journal.pcbi.1002302