Genetic circuit design automation with Cello 2.0
- Timothy S Jones, Samuel M D Oliveira, Chris J Myers, Christopher A Voigt, Douglas Densmore
- Nat Protoc, 10.1038/s41596-021-00675-2
Genetic circuit characterization by inferring RNA polymerase movement and ribosome usage
- Amin Espah Borujeni, Jing Zhang, Hamid Doosthosseini, Alec A K Nielsen, Christopher A Voigt
- Nat Commun, 10.1038/s41467-020-18630-2
Programming Escherichia coli to function as a digital display
- Jonghyeon Shin, Shuyi Zhang, Bryan S Der, Alec Ak Nielsen, Christopher A Voigt
- Mol Syst Biol, 10.15252/msb.20199401
Technological challenges and milestones for writing genomes
- Nili Ostrov, Jacob Beal, Tom Ellis, …, Alexander C Smith, C Neal Stewart, Hille Tekotte
- Science, 10.1126/science.aay0339
Cellular checkpoint control using programmable sequential logic
- Lauren B Andrews, Alec A K Nielsen, Christopher A Voigt
- Science, 10.1126/science.aap8987
Deep learning to predict the lab-of-origin of engineered DNA
- Alec A K Nielsen, Christopher A Voigt
- Nat Commun, 10.1038/s41467-018-05378-z
DNA Assembly in 3D Printed Fluidics
- William G Patrick, Alec A K Nielsen, Steven J Keating, …, Christopher A Voigt, Neri Oxman, David S Kong
- PLoS One, 10.1371/journal.pone.0143636
Permanent genetic memory with >1-byte capacity
- Lei Yang, Alec A K Nielsen, Jesus Fernandez-Rodriguez, …, Michael T Laub, Timothy K Lu, Christopher A Voigt
- Nat Methods, 10.1038/nmeth.3147
Genomic mining of prokaryotic repressors for orthogonal logic gates
- Brynne C Stanton, Alec A K Nielsen, Alvin Tamsir, Kevin Clancy, Todd Peterson, Christopher A Voigt
- Nat Chem Biol, 10.1038/nchembio.1411
Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression
- Alec A K Nielsen, Thomas H Segall-Shapiro, Christopher A Voigt
- Curr Opin Chem Biol, 10.1016/j.cbpa.2013.10.003
Characterization of 582 natural and synthetic terminators and quantification of their design constraints
- Ying-Ja Chen, Peng Liu, Alec A K Nielsen, …, Kevin Clancy, Todd Peterson, Christopher A Voigt
- Nat Methods, 10.1038/nmeth.2515