Evolutionary constraint and innovation across hundreds of placental mammals
- Matthew J Christmas, Irene M Kaplow, Diane P Genereux, …, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K Karlsson
- Science, 10.1126/science.abn3943
Beyond the Biosynthetic Gene Cluster Paradigm: Genome-Wide Coexpression Networks Connect Clustered and Unclustered Transcription Factors to Secondary Metabolic Pathways
- Min Jin Kwon, Charlotte Steiniger, Timothy C Cairns, …, Carmen Regner, Antonis Rokas, Vera Meyer
- Microbiol Spectr, 10.1128/spectrum.00898-21
The gut microbiomes of 180 species
- Abigail L Lind, Katherine S Pollard
- Science, 10.1126/science.abg9095
Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing
- Abigail L Lind, Katherine S Pollard
- Microbiome, 10.1186/s40168-021-01015-y
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms
- David E Gordon, Joseph Hiatt, Mehdi Bouhaddou, …, Andrew A Peden, Pedro Beltrao, Nevan J Krogan
- Science, 10.1126/science.abe9403
Pathogenic Allodiploid Hybrids of Aspergillus Fungi
- Jacob L Steenwyk, Abigail L Lind, Laure N A Ries, …, Katrien Lagrou, Gustavo H Goldman, Antonis Rokas
- Curr Biol, 10.1016/j.cub.2020.04.071
Functional Characterization of Clinical Isolates of the Opportunistic Fungal Pathogen Aspergillus nidulans
- Rafael Wesley Bastos, Clara Valero, Lilian Pereira Silva, …, Nancy P Keller, Laure Nicolas Annick Ries, Gustavo H Goldman
- mSphere, 10.1128/msphere.00153-20
The Aspergillus fumigatus Mismatch Repair MSH2 Homolog Is Important for Virulence and Azole Resistance
- Thaila Fernanda Dos Reis, Lilian Pereira Silva, PatrÃcia Alves de Castro, …, Abigail Lee Lind, Antonis Rokas, Gustavo H Goldman
- mSphere, 10.1128/msphere.00416-19
Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards
- Abigail L Lind, Yvonne Y Y Lai, Yulia Mostovoy, …, Pui-Yan Kwok, Katherine S Pollard, Benoit G Bruneau
- Nat Ecol Evol, 10.1038/s41559-019-0945-8
A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium
- Jacob L Steenwyk, Xing-Xing Shen, Abigail L Lind, Gustavo H Goldman, Antonis Rokas
- mBio, 10.1128/mbio.00925-19
The birth, evolution and death of metabolic gene clusters in fungi
- Antonis Rokas, Jennifer H Wisecaver, Abigail L Lind
- Nat Rev Microbiol, 10.1038/s41579-018-0075-3
An LaeA- and BrlA-Dependent Cellular Network Governs Tissue-Specific Secondary Metabolism in the Human Pathogen Aspergillus fumigatus
- Abigail L Lind, Fang Yun Lim, Alexandra A Soukup, Nancy P Keller, Antonis Rokas
- mSphere, 10.1128/msphere.00050-18
Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species
- Abigail L Lind, Jennifer H Wisecaver, Catarina Lameiras, …, Fernando Rodrigues, Gustavo H Goldman, Antonis Rokas
- PLoS Biol, 10.1371/journal.pbio.2003583
Nanoscale architecture of the Schizosaccharomyces pombe contractile ring
- Nathan A McDonald, Abigail L Lind, Sarah E Smith, Rong Li, Kathleen L Gould
- Elife, 10.7554/elife.28865
An alternative pathway to eusociality: Exploring the molecular and functional basis of fortress defense
- Sarah P Lawson, Leah T Sigle, Abigail L Lind, …, Jessica N Mezzanotte, Hans-Willi Honegger, Patrick Abbot
- Evolution, 10.1111/evo.13285
Regulation of Secondary Metabolism by the Velvet Complex Is Temperature-Responsive in Aspergillus
- Abigail L Lind, Timothy D Smith, Timothy Saterlee, Ana M Calvo, Antonis Rokas
- G3 (Bethesda), 10.1534/g3.116.033084
Examining the evolution of the regulatory circuit controlling secondary metabolism and development in the fungal genus Aspergillus
- Abigail L Lind, Jennifer H Wisecaver, Timothy D Smith, …, Xuehuan Feng, Ana M Calvo, Antonis Rokas
- PLoS Genet, 10.1371/journal.pgen.1005096
Draft Genome Sequences of a Phylogenetically Diverse Suite of Pseudomonas syringae Strains from Multiple Source Populations
- David A Baltrus, Scott Yourstone, Abigail Lind, …, Corbin D Jones, Cindy E Morris, Jeffrey L Dangl
- None, 10.1128/genomea.01195-13
Variable suites of non-effector genes are co-regulated in the type III secretion virulence regulon across the Pseudomonas syringae phylogeny
- Tatiana S Mucyn, Scott Yourstone, Abigail L Lind, …, Corbin D Jones, Jeffery L Dangl, Sarah R Grant
- PLoS Pathog, 10.1371/journal.ppat.1003807
The fumagillin gene cluster, an example of hundreds of genes under veA control in Aspergillus fumigatus
- Sourabh Dhingra, Abigail L Lind, Hsiao-Ching Lin, Yi Tang, Antonis Rokas, Ana M Calvo
- PLoS One, 10.1371/journal.pone.0077147