Inspired by: Peter S Swain
Stochastic processes are widely used as mathematical models of systems and phenomena that appear to vary in a random manner. This channel highlights research of stochastic processes in yeasts. Wikipedia (CC BY-SA 3.0)
2023 Articles
2 453 articles
Stochastic scanning events on the GCN4 mRNA 5′ untranslated region generate cell-to-cell heterogeneity in the yeast nutritional stress response
- Xiang Meng, Alan Reed, Sandie Lai, …, Sandie Lai, Juraj Szavits-Nossan, John E G McCarthy
- Nucleic Acids Res, 10.1093/nar/gkad433
Bayesian filtering for model predictive control of stochastic gene expression in single cells
- Zachary Fox, Gregory Batt, Jakob Ruess, …, Zachary R Fox, Gregory Batt, Jakob Ruess
- Phys Biol, 10.1088/1478-3975/ace094
rcell2: Microscopy-Based Cytometry in R
- Nicolás A Méndez, German Beldorati, Andreas Constantinou, …, German Beldorati, Andreas Constantinou, Alejandro Colman-Lerner
- Curr Protoc, 10.1002/cpz1.726
Being noisy in a crowd: Differential selective pressure on gene expression noise in model gene regulatory networks
- NataÅ¡a Puzović, Tanvi Madaan, Julien Y Dutheil, …, NataÅ¡a Puzović, Tanvi Madaan, Julien Y Dutheil
- PLoS Comput Biol, 10.1371/journal.pcbi.1010982
Constrained Langevin approximation for the Togashi-Kaneko model of autocatalytic reactions
- Wai-Tong Louis Fan, Yifan Johnny Yang, Chaojie Yuan
- Math Biosci Eng, 10.3934/mbe.2023201
The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-Poissonian
- Douglas E Weidemann, Abhyudai Singh, Ramon Grima, …, Abhyudai Singh, Ramon Grima, Silke Hauf
- bioRxiv : the preprint server for biology, 10.1101/2023.03.06.531283
Characterization of cell-to-cell variation in nuclear transport rates and identification of its sources
- Durrieu LucÃa, Bush Alan, Grande Alicia, …, Andrea Katz, Gunnar Cedersund, Alejandro Colman-Lerner
- None, 10.1016/j.isci.2022.105906
mSphere of Influence: Deterministic and Stochastic Processes Drive Microbial Evolution
- Aleeza C Gerstein, Aleeza C Gerstein, Aleeza C Gerstein, Aleeza C Gerstein, Aleeza C Gerstein, Aleeza C Gerstein
- mSphere, 10.1128/msphere.00022-23
MaxCal can infer models from coupled stochastic trajectories of gene expression and cell division
- Andrew Torres, Spencer Cockerell, Michael Phillips, …, Michael Phillips, Gábor Balázsi, Kingshuk Ghosh
- Biophys J, 10.1016/j.bpj.2023.05.017
Optimal control of bioproduction in the presence of population heterogeneity
- J Frédéric Bonnans, Jakob Ruess, J Frédéric Bonnans, …, Davin Lunz, J Frédéric Bonnans, Jakob Ruess
- J Math Biol, 10.1007/s00285-023-01876-x
2022 Articles
219 articles
Polarization and cell-fate decision facilitated by the adaptor Ste50p in Saccharomyces cerevisiae
- Nusrat Sharmeen, Chris Law, Cunle Wu, …, Nusrat Sharmeen, Chris Law, Cunle Wu
- PLoS One, 10.1371/journal.pone.0278614
Transcription factor binding process is the primary driver of noise in gene expression
- Lavisha Parab, Sampriti Pal, Riddhiman Dhar, …, Lavisha Parab, Sampriti Pal, Riddhiman Dhar
- PLoS Genet, 10.1371/journal.pgen.1010535
Loss-of-heterozygosity facilitates a fitness valley crossing in experimentally evolved multicellular yeast
- Beatriz Baselga-Cervera, Noah Gettle, Michael Travisano, …, Beatriz Baselga-Cervera, Noah Gettle, Michael Travisano
- Proc Biol Sci, 10.1098/rspb.2021.2722
Genome-wide inference reveals that feedback regulations constrain promoter-dependent transcriptional burst kinetics
- Songhao Luo, Zihao Wang, Zhenquan Zhang, …, Zhenquan Zhang, Tianshou Zhou, Jiajun Zhang
- Nucleic Acids Res, 10.1093/nar/gkac1204
Enhanced Transcriptional Strength of HIV-1 Subtype C Minimizes Gene Expression Noise and Confers Stability to the Viral Latent State
- Sreshtha Pal, Vijeta Jaiswal, Narendra Nala, …, Vijeta Jaiswal, Narendra Nala, Udaykumar Ranga
- J Virol, 10.1128/jvi.01376-22
Engineering a two-gene system to operate as a highly sensitive biosensor or a sharp switch upon induction with β-estradiol
- Tian Zhou, Zhiying Liang, Tian Zhou, …, Tian Zhou, Zhiying Liang, Mario Andrea Marchisio
- Sci Rep, 10.1038/s41598-022-26195-x
Combinatorial library design for improving isobutanol production in Saccharomyces cerevisiae
- Francesca V Gambacorta, Joshua J Dietrich, Justin J Baerwald, …, Stephanie J Brown, Yun Su, Brian F Pfleger
- None, 10.3389/fbioe.2022.1080024
Coupling Cell Communication and Optogenetics: Implementation of a Light-Inducible Intercellular System in Yeast
- Vicente Rojas, Luis F Larrondo, Vicente Rojas, …, Luis F Larrondo, Vicente Rojas, Luis F Larrondo
- ACS Synth Biol, 10.1021/acssynbio.2c00338
Distance-dependent inhibition of translation initiation by downstream out-of-frame AUGs is consistent with a Brownian ratchet process of ribosome scanning
- Ke Li, Jinhui Kong, Shuo Zhang, …, Shuo Zhang, Tong Zhao, Wenfeng Qian
- Genome Biol, 10.1186/s13059-022-02829-1
Accurate determination of causalities in gene regulatory networks by dissecting downstream target genes
- Zhigang Jia, Xiujun Zhang, Zhigang Jia, Xiujun Zhang
- None, 10.3389/fgene.2022.923339