Inspired by: Johannes van Dijken
Metabolic network modelling, also known as metabolic network reconstruction or metabolic pathway analysis, allows for an in-depth insight into the molecular mechanisms of yeasts. Wikipedia (CC BY-SA 3.0)
2023 Articles
11 729 articles
Engineering for inevitable surprises
- Guru Madhavan, John L Anderson, Alton D Romig, Guru Madhavan, John L Anderson, Alton D Romig
- None, 10.1093/pnasnexus/pgac014
Measuring the Oxidation State and Enzymatic Activity of Glyceraldehyde Phosphate Dehydrogenase (GAPDH)
- Claudia Montllor-Albalate, Anna E Thompson, Hyojung Kim, …, Anna E Thompson, Hyojung Kim, Amit R Reddi
- Methods Mol Biol, 10.1007/978-1-0716-3247-5_17
Elucidating yeast glycolytic dynamics at steady state growth and glucose pulses through kinetic metabolic modeling
- David Lao-Martil, Joep P J Schmitz, Bas Teusink, …, Joep P J Schmitz, Bas Teusink, Natal A W van Riel
- Metab Eng, 10.1016/j.ymben.2023.03.005
Two separate pathways underlie NADH and succinate oxidation in swine heart mitochondria: Kinetic evidence on the mobile electron carriers
- Salvatore Nesci, Cristina Algieri, Fabiana Trombetti, …, Fabiana Trombetti, Micaela Fabbri, Giorgio Lenaz
- Biochim Biophys Acta Bioenerg, 10.1016/j.bbabio.2023.148977
Linear Response Theory of Evolved Metabolic Systems
- Jumpei F Yamagishi, Tetsuhiro S Hatakeyama, Jumpei F Yamagishi, Tetsuhiro S Hatakeyama, Jumpei F Yamagishi, Tetsuhiro S Hatakeyama
- Phys Rev Lett, 10.1103/physrevlett.131.028401
L-lactate production in engineered Saccharomyces cerevisiae using a multistage multiobjective automated design framework
- Matteo N Amaradio, Giorgio Jansen, Jole Costanza, …, Paola Branduardi, Danilo Porro, Giuseppe Nicosia
- Biotechnol Bioeng, 10.1002/bit.28391
Metabolic function-based normalization improves transcriptome data-driven reduction of genome-scale metabolic models
- Mahdi Jalili, Martin Scharm, Olaf Wolkenhauer, …, Martin Scharm, Olaf Wolkenhauer, Ali Salehzadeh-Yazdi
- NPJ Syst Biol Appl, 10.1038/s41540-023-00281-w
Dynamic genome-scale modeling of Saccharomyces cerevisiae unravels mechanisms for ester formation during alcoholic fermentation
- William T Scott, David Henriques, Eddy J Smid, …, Eddy J Smid, Richard A Notebaart, Eva Balsa-Canto
- Biotechnol Bioeng, 10.1002/bit.28421
Using Kinetic Modelling to Infer Adaptations in Saccharomyces cerevisiae Carbohydrate Storage Metabolism to Dynamic Substrate Conditions
- David Lao-Martil, Koen J A Verhagen, Ana H Valdeira Caetano, …, Ilse H Pardijs, Natal A W van Riel, S Aljoscha Wahl
- None, 10.3390/metabo13010088
2022 Articles
1 160 articles
Modeling the metabolic dynamics at the genome-scale by optimized yield analysis
- Hao Luo, Peishun Li, Boyang Ji, …, Peishun Li, Boyang Ji, Jens Nielsen
- Metab Eng, 10.1016/j.ymben.2022.12.001
Protective effects of thiamine on Wickerhamomyces anomalus against ethanol stress
- Yinfeng Li, Hua Long, Guilan Jiang, …, Tianbing Guan, Yan Zhao, Xiaozhu Liu
- None, 10.3389/fmicb.2022.1057284
Engineering Pheromone-Mediated Quorum Sensing with Enhanced Response Output Increases Fucosyllactose Production in Saccharomyces cerevisiae
- Mingyuan Xu, Mengtong Sun, Xiangfeng Meng, …, Weixin Zhang, Yu Shen, Weifeng Liu
- ACS Synth Biol, 10.1021/acssynbio.2c00507
Improving ATP availability by sod1 deletion with a strategy of precursor feeding enhanced S-adenosyl-L-methionine accumulation in Saccharomyces cerevisiae
- Zhong-Ce Hu, Chui-Mu Zheng, Yun-Chao Tao, …, Yuan-Shan Wang, Zhi-Qiang Liu, Yu-Guo Zheng
- Enzyme Microb Technol, 10.1016/j.enzmictec.2022.110189
Combinatorial library design for improving isobutanol production in Saccharomyces cerevisiae
- Francesca V Gambacorta, Joshua J Dietrich, Justin J Baerwald, …, Stephanie J Brown, Yun Su, Brian F Pfleger
- None, 10.3389/fbioe.2022.1080024
Regulation of mitochondrial complex III activity and assembly by TRAP1 in cancer cells
- Danilo Swann Matassa, Daniela Criscuolo, Rosario Avolio, …, Nazzareno Capitanio, Matteo Landriscina, Franca Esposito
- None, 10.1186/s12935-022-02788-4
Ubiquitin-Conjugating Enzymes Ubc1 and Ubc4 Mediate the Turnover of Hap4, a Master Regulator of Mitochondrial Biogenesis in Saccharomyces cerevisiae
- Denise Capps, Arielle Hunter, Mengying Chiang, …, Mengying Chiang, Tammy Pracheil, Zhengchang Liu
- None, 10.3390/microorganisms10122370
Machine learning-guided prediction of potential engineering targets for microbial production of lycopene
- Chang Keun Kang, Jihoon Shin, YoonKyung Cha, …, TaeHo Kim, Young-Kwon Park, Yong Jun Choi
- Bioresour Technol, 10.1016/j.biortech.2022.128455
Spatial-temporal regulation of fatty alcohol biosynthesis in yeast
- Ning Gao, Jiaoqi Gao, Wei Yu, …, Wei Yu, Sijia Kong, Yongjin J Zhou
- None, 10.1186/s13068-022-02242-7
Active Ras2 in mitochondria promotes regulated cell death in a cAMP/PKA pathway-dependent manner in budding yeast
- Barbara Bonomelli, Stefano Busti, Enzo Martegani, …, Stefano Busti, Enzo Martegani, Sonia Colombo
- FEBS Lett, 10.1002/1873-3468.14567