Inspired by: Arjun Raj
Transcriptomics imaging aims to visualize the spatial distribution of RNA molecules within cells or tissues. This provides a spatial context to gene expression data, which can be invaluable in understanding tissue organization, cellular interactions, and developmental processes. ChatGPT (CC BY 4.0)
2023 Articles
375 articles
Mapping RNA translation
- Rong Fan, Rong Fan, Rong Fan, Rong Fan, Rong Fan
- Science, 10.1126/science.adi6844
The dawn of spatial omics
- Dario Bressan, Giorgia Battistoni, Gregory J Hannon, …, Dario Bressan, Giorgia Battistoni, Gregory J Hannon
- Science, 10.1126/science.abq4964
Identifying spatial domain by adapting transcriptomics with histology through contrastive learning
- Yuansong Zeng, Rui Yin, Mai Luo, …, Yutong Lu, Weijiang Yu, Yuedong Yang
- Brief Bioinform, 10.1093/bib/bbad048
Spatially resolved transcriptomics: A comprehensive review of their technological advances, applications, and challenges
- Mengnan Cheng, Yujia Jiang, Jiangshan Xu, …, Sunil Kumar Sahu, Longqi Liu, Xun Xu
- J Genet Genomics, 10.1016/j.jgg.2023.03.011
Dissecting mammalian reproduction with spatial transcriptomics
- Xin Zhang, Qiqi Cao, Shreya Rajachandran, Edward J Grow, Melanie Evans, Haiqi Chen
- Hum Reprod Update, 10.1093/humupd/dmad017
FISHFactor: a probabilistic factor model for spatial transcriptomics data with subcellular resolution
- Florin C Walter, Oliver Stegle, Britta Velten, …, Florin C Walter, Oliver Stegle, Britta Velten
- Bioinformatics, 10.1093/bioinformatics/btad183
Spatial Transcriptomic Technologies
- Tsai-Ying Chen, Li You, Jose Angelito U Hardillo, …, Li You, Jose Angelito U Hardillo, Miao-Ping Chien
- Cells, 10.3390/cells12162042
Advances in spatial transcriptomics and related data analysis strategies
- Jun Du, Yu-Chen Yang, Zhi-Jie An, …, Zou-Fang Huang, Ye Yuan, Jian Hou
- J Transl Med, 10.1186/s12967-023-04150-2
Spatial Transcriptomics: Technical Aspects of Recent Developments and Their Applications in Neuroscience and Cancer Research
- Han-Eol Park, Song Hyun Jo, Rosalind H Lee, …, Chung Whan Lee, Junho K Hur, Chang Ho Sohn
- Adv Sci (Weinh), 10.1002/advs.202206939
Image recovery from unknown network mechanisms for DNA sequencing-based microscopy
- David Fernandez Bonet, Ian T Hoffecker
- Nanoscale, 10.1039/d2nr05435c
2022 Articles
25 articles
Spatial omics technologies at multimodal and single cell/subcellular level
- Jiwoon Park, Junbum Kim, Tyler Lewy, …, Olivier Elemento, André F Rendeiro, Christopher E Mason
- Genome Biol, 10.1186/s13059-022-02824-6
Deconvolution algorithms for inference of the cell-type composition of the spatial transcriptome
- Yingkun Zhang, Xinrui Lin, Zhixian Yao, …, Xiaoyu Wang, Chaoyong Yang, Jia Song
- None, 10.1016/j.csbj.2022.12.001
Multiomic Spatial Mapping of Myocardial Infarction and Implications for Personalized Therapy
- David Schumacher, Rafael Kramann, David Schumacher, …, Rafael Kramann, David Schumacher, Rafael Kramann
- Arterioscler Thromb Vasc Biol, 10.1161/atvbaha.122.318333
Single-cell and spatial multi-omics in the plant sciences: Technical advances, applications, and perspectives
- Xiaole Yu, Zhixin Liu, Xuwu Sun, …, Xiaole Yu, Zhixin Liu, Xuwu Sun
- Plant Commun, 10.1016/j.xplc.2022.100508
Massively Parallel CRISPR-Based Genetic Perturbation Screening at Single-Cell Resolution
- Junyun Cheng, Gaole Lin, Tianhao Wang, …, Ling Zhu, Yi Wang, Xiaohui Fan
- Adv Sci (Weinh), 10.1002/advs.202204484
TATTOO-seq delineates spatial and cell type-specific regulatory programs in the developing limb
- Sébastien Bastide, Elad Chomsky, Baptiste Saudemont, …, Heather Marlow, Amos Tanay, François Spitz
- Sci Adv, 10.1126/sciadv.add0695
The Utility of Spatial Transcriptomics for Solid Organ Transplantation
- Jennifer S Y Li, Arti M Raghubar, Nicholas A Matigian, …, Monica S Y Ng, Natasha M Rogers, Andrew J Mallett
- Transplantation, 10.1097/tp.0000000000004466
Spatial proteomics in three-dimensional intact specimens
- Harsharan Singh Bhatia, Andreas-David Brunner, Furkan Öztürk, …, Fabian Theis, Matthias Mann, Ali Ertürk
- Cell, 10.1016/j.cell.2022.11.021
CoLoC-seq probes the global topology of organelle transcriptomes
- Damien Jeandard, Anna Smirnova, Akinyemi Mandela Fasemore, …, Konrad U Förstner, Ivan Tarassov, Alexandre Smirnov
- Nucleic Acids Res, 10.1093/nar/gkac1183
Chromatin modules and their implication in genomic organization and gene regulation
- Guido van Mierlo, Olga Pushkarev, Judith F Kribelbauer, …, Olga Pushkarev, Judith F Kribelbauer, Bart Deplancke
- Trends Genet, 10.1016/j.tig.2022.11.003