None
2023 Articles
7 497 articles
Mapping RNA translation
- Rong Fan, Rong Fan, Rong Fan, Rong Fan, Rong Fan
- Science, 10.1126/science.adi6844
Massively Parallel Profiling of Accessible Chromatin and Proteins with ASAP-Seq
- Eleni P Mimitou, Peter Smibert, Caleb A Lareau, …, Eleni P Mimitou, Peter Smibert, Caleb A Lareau
- Methods Mol Biol, 10.1007/978-1-0716-2899-7_13
A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics
- Haoyang Li, Juexiao Zhou, Zhongxiao Li, …, Yu Wang, Shiwei Sun, Xin Gao
- Nat Commun, 10.1038/s41467-023-37168-7
Single-cell RNA-seq data analysis based on directed graph neural network
- Xiang Feng, Hongqi Zhang, Hao Lin, …, Hongqi Zhang, Hao Lin, Haixia Long
- Methods, 10.1016/j.ymeth.2023.02.008
Characterization and decontamination of background noise in droplet-based single-cell protein expression data with DecontPro
- Yuan Yin, Masanao Yajima, Joshua D Campbell, …, Yuan Yin, Masanao Yajima, Joshua D Campbell
- bioRxiv : the preprint server for biology, 10.1101/2023.01.27.525964
Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender
- Mark D Chaffin, Alessandro Arduini, Amer-Denis Akkad, …, Anthony A Philippakis, Patrick T Ellinor, Mehrtash Babadi
- Nat Methods, 10.1038/s41592-023-01943-7
SpaDecon: cell-type deconvolution in spatial transcriptomics with semi-supervised learning
- Jian Hu, Amelia Schroeder, Edward B Lee, …, Amelia Schroeder, Edward B Lee, Mingyao Li
- Commun Biol, 10.1038/s42003-023-04761-x
Approaches for single-cell RNA sequencing across tissues and cell types
- Pooja Sant, Karsten Rippe, Jan-Philipp Mallm, Pooja Sant, Karsten Rippe, Jan-Philipp Mallm
- Transcription, 10.1080/21541264.2023.2200721
The technological landscape and applications of single-cell multi-omics
- Alev Baysoy, Zhiliang Bai, Rahul Satija, …, Zhiliang Bai, Rahul Satija, Rong Fan
- Nat Rev Mol Cell Biol, 10.1038/s41580-023-00615-w
Accurate and interpretable gene expression imputation on scRNA-seq data using IGSimpute
- Ke Xu, ChinWang Cheong, Werner P Veldsman, …, Aiping Lyu, William K Cheung, Lu Zhang
- Brief Bioinform, 10.1093/bib/bbad124
2022 Articles
689 articles
Single-cell RNA-seq data analysis using graph autoencoders and graph attention networks
- Xiang Feng, Fang Fang, Haixia Long, …, Haixia Long, Rao Zeng, Yuhua Yao
- None, 10.3389/fgene.2022.1003711
Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing
- Jonathan Liu, Vanessa Tran, Venkata Naga Pranathi Vemuri, …, John Haliburton, Angela Oliveira Pisco, Norma F Neff
- Life Sci Alliance, 10.26508/lsa.202201701
Benchmarking automated cell type annotation tools for single-cell ATAC-seq data
- Yuge Wang, Xingzhi Sun, Hongyu Zhao, Yuge Wang, Xingzhi Sun, Hongyu Zhao
- None, 10.3389/fgene.2022.1063233
Biology-inspired data-driven quality control for scientific discovery in single-cell transcriptomics
- Mikhail Alperovich, Yiming Yang, Bo Li, …, Mikhail Alperovich, Yiming Yang, Bo Li
- Genome Biol, 10.1186/s13059-022-02820-w
scCapsNet-mask: an updated version of scCapsNet with extended applicability in functional analysis related to scRNA-seq data
- Lifei Wang, Rui Nie, Jiang Zhang, …, Rui Nie, Jiang Zhang, Jun Cai
- BMC Bioinformatics, 10.1186/s12859-022-05098-8
Clustering of single-cell multi-omics data with a multimodal deep learning method
- Xiang Lin, Tian Tian, Hakon Hakonarson, …, Tian Tian, Zhi Wei, Hakon Hakonarson
- Nat Commun, 10.1038/s41467-022-35031-9
A single-cell RNA labeling strategy for measuring stress response upon tissue dissociation
- Anika Neuschulz, Olga Bakina, Victor Badillo-Lisakowski, …, Michael Gotthardt, Helmut Kettenmann, Jan Philipp Junker
- Mol Syst Biol, 10.15252/msb.202211147
EnDecon: cell type deconvolution of spatially resolved transcriptomics data via ensemble learning
- Jia-Juan Tu, Hui-Sheng Li, Hong Yan, …, Hui-Sheng Li, Hong Yan, Xiao-Fei Zhang
- Bioinformatics, 10.1093/bioinformatics/btac825
Deconvolution algorithms for inference of the cell-type composition of the spatial transcriptome
- Yingkun Zhang, Xinrui Lin, Zhixian Yao, …, Xiaoyu Wang, Chaoyong Yang, Jia Song
- None, 10.1016/j.csbj.2022.12.001
Advances in Single-Cell Sequencing Technology and Its Application in Poultry Science
- Yong Liu, Shuangmin Liang, Bo Wang, …, Junjing Jia, Kun Wang, Changrong Ge
- Genes (Basel), 10.3390/genes13122211