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2023 Articles
25 052 articles
Data-Driven Optimization of DIA Mass-Spectrometry by DO-MS
- Georg Wallmann, Andrew Leduc, Nikolai Slavov, …, Georg Wallmann, Andrew Leduc, Nikolai Slavov
- bioRxiv : the preprint server for biology, 10.1101/2023.02.02.526809
HyperSCP: Combining Isotopic and Isobaric Labeling for Higher Throughput Single-Cell Proteomics
- Yiran Liang, Thy Truong, Aubrianna J Saxton, …, Samuel H Payne, Pam M Van Ry, Ryan T Kelly
- Anal Chem, 10.1021/acs.analchem.3c00906
Assessing the Role of Trypsin in Quantitative Plasma and Single-Cell Proteomics toward Clinical Application
- Jakob Woessmann, Valdemaras Petrosius, Nil Üresin, …, Ulrich Auf dem Keller, Fredrik Edfors, Erwin M Schoof
- Anal Chem, 10.1021/acs.analchem.3c02543
Increasing Proteome Depth While Maintaining Quantitative Precision in Short-Gradient Data-Independent Acquisition Proteomics
- Joerg Doellinger, Christian Blumenscheit, Andy Schneider, …, Christian Blumenscheit, Andy Schneider, Peter Lasch
- J Proteome Res, 10.1021/acs.jproteome.3c00078
Second Special Issue on Methods for Omics Research: Proteome Research and Beyond
- Laurence Florens, Meng-Qiu Dong, Joshua LaBaer, …, Laurence Florens, Meng-Qiu Dong, Joshua LaBaer
- J Proteome Res, 10.1021/acs.jproteome.3c00219
Analysis of single cells treated with the KRAS G12D inhibitor MRTX 1133 reveals new challenges for the emerging field of single cell proteomics
- Benjamin C Orsburn, Benjamin C Orsburn
- bioRxiv : the preprint server for biology, 10.1101/2023.03.23.533981
Easy and Accessible Workflow for Label-Free Single-Cell Proteomics
- Ximena Sanchez-Avila, Thy Truong, Xiaofeng Xie, …, Nathaniel B Axtell, Veronica Puig-Sanvicens, Ryan T Kelly
- J Am Soc Mass Spectrom, 10.1021/jasms.3c00240
Evaluation of DDA Library-Free Strategies for Phosphoproteomics and Ubiquitinomics Data-Independent Acquisition Data
- Chengwen Wen, Xiurong Wu, Guanzhong Lin, …, Xianming Liu, Guo Fu, Chuan-Qi Zhong
- J Proteome Res, 10.1021/acs.jproteome.2c00735
Fast proteomics with dia-PASEF and analytical flow-rate chromatography
- Lukasz Szyrwiel, Christoph Gille, Michael Mülleder, Vadim Demichev, Markus Ralser
- Proteomics, 10.1002/pmic.202300100
A transformer architecture for retention time prediction in liquid chromatography mass spectrometry-based proteomics
- Thang V Pham, Vinh V Nguyen, Duong Vu, …, Robin A Richardson, Sander R Piersma, Connie R Jimenez
- Proteomics, 10.1002/pmic.202200041
2022 Articles
2 647 articles
MS-DAP Platform for Downstream Data Analysis of Label-Free Proteomics Uncovers Optimal Workflows in Benchmark Data Sets and Increased Sensitivity in Analysis of Alzheimer’s Biomarker Data
- Frank Koopmans, Ka Wan Li, Remco V Klaassen, …, Ka Wan Li, Remco V Klaassen, August B Smit
- J Proteome Res, 10.1021/acs.jproteome.2c00513
Solid-phase alkylation: a low-loss and anti-interference sample preparation strategy for low-input proteome profiling
- Yilan Li, Huiming Yuan, Mengchun Cheng, …, Chunyu Zhang, Lihua Zhang, Yukui Zhang
- Sci Bull (Beijing), 10.1016/j.scib.2022.07.025
Label-Free Quantification from Direct Infusion Shotgun Proteome Analysis (DISPA-LFQ) with CsoDIAq Software
- Yuming Jiang, Alexandre Hutton, Caleb W Cranney, …, Alexandre Hutton, Caleb W Cranney, Jesse G Meyer
- Anal Chem, 10.1021/acs.analchem.2c02249
Improving SWATH-MS analysis by deep-learning
- Bo Sun, Pawel Smialowski, Wasim Aftab, …, Ignasi Forne, Tobias Straub, Axel Imhof
- Proteomics, 10.1002/pmic.202200179
A simple, rapid, and practical method for single-cell proteomics based on mass-adaptive coating of synthetic peptides
- Siqi Li, Kaichan Su, Zhenkun Zhuang, …, Siqi Liu, Hongming Zhu, Yan Ren
- Sci Bull (Beijing), 10.1016/j.scib.2021.12.022
Highly Accurate and Robust Absolute Quantification of Target Proteins in Formalin-Fixed Paraffin-Embedded (FFPE) Tissues by LC-MS
- Jie Pu, Chao Xue, Shihan Huo, …, Eric Yang, Timothy W Sikorski, Jun Qu
- Anal Chem, 10.1021/acs.analchem.2c03473
Does filter-aided sample preparation provide sufficient method linearity for quantitative plant shotgun proteomics?
- Tatiana Leonova, Christian Ihling, Mohamad Saoud, …, Robert Rennert, Ludger A Wessjohann, Andrej Frolov
- None, 10.3389/fpls.2022.874761
Proteomic repository data submission, dissemination, and reuse: key messages
- Yasset Perez-Riverol, Yasset Perez-Riverol, Yasset Perez-Riverol, …, Yasset Perez-Riverol, Yasset Perez-Riverol, Yasset Perez-Riverol
- Expert Rev Proteomics, 10.1080/14789450.2022.2160324
Capillary liquid chromatography coupled with mass spectrometry for analysis of nanogram protein quantities on a wide-pore superficially porous particle column in top-down proteomics
- Laurent Lignieres, Véronique Legros, Manel Khelil, …, Matthew A Lauber, Jean-Michel Camadro, Guillaume Chevreux
- J Chromatogr B Analyt Technol Biomed Life Sci, 10.1016/j.jchromb.2022.123566
Exploring functional protein covariation across single cells using nPOP
- Andrew Leduc, R Gray Huffman, Joshua Cantlon, …, Joshua Cantlon, Saad Khan, Nikolai Slavov
- Genome Biol, 10.1186/s13059-022-02817-5