Channel: 🌻🧬 Plant genome evolution

Plant genome evolution is a vast and intricate topic that explores how the genomes of plants have changed and diversified over time. The study of plant genome evolution provides insights into the diversity, adaptability, and complexity of the plant kingdom. ChatGPT (CC BY 4.0)

2023 Articles

6 510 articles

Plant GARDEN: a portal website for cross-searching between different types of genomic and genetic resources in a wide variety of plant species

  • Hisako Ichihara, Manabu Yamada, Mitsuyo Kohara, …, Eiji Sugihara, Satoshi Tabata, Sachiko N Isobe
  • BMC Plant Biol, 10.1186/s12870-023-04392-8
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Genetics of Plant Metabolism

  • Nicolò G M Cultrera, Nicolò G M Cultrera, Nicolò G M Cultrera
  • Int J Mol Sci, 10.3390/ijms24086890
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Navigating the CoGe Online Software Suite for Polyploidy Research

  • Victor A Albert, Trevor J Krabbenhoft, Victor A Albert, Trevor J Krabbenhoft, Victor A Albert, Trevor J Krabbenhoft
  • Methods Mol Biol, 10.1007/978-1-0716-2561-3_2
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Annotated genome sequence of a fast-growing diploid clone of red alder (Alnus rubra Bong.)

  • Kim K Hixson, Diego A Fajardo, Nicholas P Devitt, …, Laurence B Davin, Norman G Lewis, Callum J Bell
  • G3 (Bethesda), 10.1093/g3journal/jkad060
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Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes

  • Alan M Cleary, Andrew D Farmer, Alan M Cleary, …, Andrew D Farmer, Alan M Cleary, Andrew D Farmer
  • Nucleic Acids Res, 10.1093/nar/gkad391
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First whole genome assembly and annotation of a European common bean cultivar using PacBio HiFi and Iso-Seq data

  • Sébastien Carrère, Baptiste Mayjonade, David Lalanne, …, Sylvain Gaillard, Jérôme Verdier, Nicolas W G Chen
  • None, 10.1016/j.dib.2023.109182
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Structural and gene composition variation of the complete mitochondrial genome of Mammillaria huitzilopochtli (Cactaceae, Caryophyllales), revealed by de novo assembly

  • David Cruz Plancarte, Sofía Solórzano, David Cruz Plancarte, Sofía Solórzano, David Cruz Plancarte, Sofía Solórzano
  • BMC Genomics, 10.1186/s12864-023-09607-8
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Phylogenetic analysis of bHLH classes III and IV in land plants and their algal relatives

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Comparative and expression analyses of AP2/ERF genes reveal copy number expansion and potential functions of ERF genes in Solanaceae

  • Jin-Wook Choi, Hyeon Ho Choi, Young-Soo Park, …, Young-Soo Park, Min-Jeong Jang, Seungill Kim
  • BMC Plant Biol, 10.1186/s12870-022-04017-6
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CRISPR-Cas9-based repeat depletion for high-throughput genotyping of complex plant genomes

  • Marzia Rossato, Luca Marcolungo, Luca De Antoni, …, David James Konkin, Massimo Delledonne, Roberto Papa
  • Genome Res, 10.1101/gr.277628.122
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2022 Articles

650 articles

Differentiation of Lingxiaohua and Yangjinhua by chloroplast genome sequencing and DNA barcoding markers

  • Hiu-Lam Ngai, Bobby Lim-Ho Kong, David Tai-Wai Lau, …, Bobby Lim-Ho Kong, David Tai-Wai Lau, Pang-Chui Shaw
  • Genome, 10.1139/gen-2022-0063
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syntenet: an R/Bioconductor package for the inference and analysis of synteny networks

  • Fabricio Almeida-Silva, Tao Zhao, Kristian K Ullrich, …, Kristian K Ullrich, M Eric Schranz, Yves Van de Peer
  • Bioinformatics, 10.1093/bioinformatics/btac806
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Biased mutations and gene losses underlying diploidization of the tetraploid broomcorn millet genome

  • Yanling Sun, Yang Liu, Jinfeng Shi, …, Jun Yang, Jinfeng Chen, Mingsheng Chen
  • Plant J, 10.1111/tpj.16085
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Genome-wide identification and characterization of exapted transposable elements in the large genome of sunflower (Helianthus annuus L.)

  • Maria Ventimiglia, Giovanni Marturano, Alberto Vangelisti, …, Lucia Natali, Andrea Zuccolo, Flavia Mascagni
  • Plant J, 10.1111/tpj.16078
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Plastome characteristics and species identification of Chinese medicinal wintergreens (Gaultheria, Ericaceae)

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Super-Mitobarcoding in Plant Species Identification? It Can Work! The Case of Leafy Liverworts Belonging to the Genus Calypogeia

  • Monika Åšlipiko, Kamil MyszczyÅ„ski, Katarzyna Buczkowska, …, Katarzyna Buczkowska, Alina BÄ…czkiewicz, Jakub Sawicki
  • Int J Mol Sci, 10.3390/ijms232415570
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Complete Chloroplast Genome Sequence of Endangered Species in the Genus Opisthopappus C. Shih: Characterization, Species Identification, and Phylogenetic Relationships

  • Xinke Zhang, Guoshuai Zhang, Yuan Jiang, …, Guoshuai Zhang, Yuan Jiang, Linfang Huang
  • Genes (Basel), 10.3390/genes13122410
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Genome-wide identification, characterization, and evolutionary analysis of NBS genes and their association with disease resistance in Musa spp

  • Chandrasekar Arumugam, Backiyarani Suthanthiram, Thangavelu Raman, …, Backiyarani Suthanthiram, Thangavelu Raman, Uma Subbaraya
  • Funct Integr Genomics, 10.1007/s10142-022-00925-w
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Plant pan-genomics and its applications

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Chromosome-scale genome assembly of Eustoma grandiflorum, the first complete genome sequence in the genus Eustoma

  • Kenta Shirasawa, Ryohei Arimoto, Hideki Hirakawa, …, Makoto Endo, Saneyuki Kawabata, Sachiko N Isobe
  • G3 (Bethesda), 10.1093/g3journal/jkac329
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