Next-generation sequencing (NGS), sometimes referred to as high-throughput sequencing, represents a group of modern sequencing technologies that allow for the rapid and simultaneous sequencing of many DNA or RNA molecules. These technologies have revolutionized genomics, transcriptomics, and other fields by significantly reducing the cost per sequenced base and increasing the throughput of sequencing experiments. ChatGPT (CC BY 4.0)
2023 Articles
13 445 articles
Method of the year: long-read sequencing
- Vivien Marx, Vivien Marx, Vivien Marx
- Nat Methods, 10.1038/s41592-022-01730-w
LRphase: an efficient method for assigning haplotype identity to long reads
- Monica J Holmes, Babak Mahjour, Christopher P Castro, …, Gregory A Farnum, Adam G Diehl, Alan P Boyle
- bioRxiv : the preprint server for biology, 10.1101/2023.01.18.524565
Human populations are not biologically and genetically discrete
- Martin S Fischer, Johannes Krause, Martin S Fischer, …, Johannes Krause, Martin S Fischer, Johannes Krause
- Br J Psychol, 10.1111/bjop.12635
The human pangenome reference anticipates equitable and fundamental genomic insights
- Kelly A Frazer, Nicholas J Schork, Kelly A Frazer, Nicholas J Schork
- None, 10.1016/j.xgen.2023.100360
LRez: a C++ API and toolkit for analyzing and managing Linked-Reads data
- Pierre Morisse, Claire Lemaitre, Fabrice Legeai, Pierre Morisse, Claire Lemaitre, Fabrice Legeai
- None, 10.1093/bioadv/vbab022
HQAlign: Aligning nanopore reads for SV detection using current-level modeling
- Dhaivat Joshi, Suhas Diggavi, Mark J P Chaisson, …, Suhas Diggavi, Mark J P Chaisson, Sreeram Kannan
- bioRxiv : the preprint server for biology, 10.1101/2023.01.08.523172
ATAC-seq Data Processing
- Daniel S Kim, Daniel S Kim, Daniel S Kim, Daniel S Kim
- Methods Mol Biol, 10.1007/978-1-0716-2899-7_17
SAMStat 2: quality control for next generation sequencing data
- Timo Lassmann, Timo Lassmann, Timo Lassmann, Timo Lassmann, Timo Lassmann
- Bioinformatics, 10.1093/bioinformatics/btad019
NanoSTR: A method for detection of target short tandem repeats based on nanopore sequencing data
- Jidong Lang, Zhihua Xu, Yue Wang, …, Yue Wang, Jiguo Sun, Zhi Yang
- None, 10.3389/fmolb.2023.1093519
Structural Refinement by Direct Mapping Reveals Assembly Inconsistencies near Hi-C Junctions
- Luca Marcolungo, Leonardo Vincenzi, Matteo Ballottari, …, Matteo Orlandi, Marzia Rossato, Massimo Delledonne
- None, 10.3390/plants12020320
2022 Articles
1 272 articles
NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data
- Neng Huang, Minghua Xu, Fan Nie, …, Chuan-Le Xiao, Feng Luo, Jianxin Wang
- Bioinformatics, 10.1093/bioinformatics/btac824
Analysis of mutational genotyping using correctable decoding sequencing with superior specificity
- Pengfeng Xiao, Huan Huang, Zuhong Lu, …, Huan Huang, Guohua Zhou, Zuhong Lu
- Analyst, 10.1039/d2an01805e
Truvari: refined structural variant comparison preserves allelic diversity
- Vipin K Menon, Richard A Gibbs, Ginger A Metcalf, …, Richard A Gibbs, Ginger A Metcalf, Fritz J Sedlazeck
- Genome Biol, 10.1186/s13059-022-02840-6
YaHS: yet another Hi-C scaffolding tool
- Chenxi Zhou, Shane A McCarthy, Richard Durbin, …, Chenxi Zhou, Shane A McCarthy, Richard Durbin
- Bioinformatics, 10.1093/bioinformatics/btac808
CNV-PCC: An efficient method for detecting copy number variations from next-generation sequencing data
- Tong Zhang, Jinxin Dong, Hua Jiang, …, Zuyao Zhao, Mengjiao Zhou, Tianting Yuan
- None, 10.3389/fbioe.2022.1000638
Open-Access Worldwide Population STR Database Constructed Using High-Coverage Massively Parallel Sequencing Data Obtained from the 1000 Genomes Project
- Tamara Soledad Frontanilla, Guilherme Valle-Silva, Jesus Ayala, …, Guilherme Valle-Silva, Jesus Ayala, Celso Teixeira Mendes-Junior
- Genes (Basel), 10.3390/genes13122205
Analysis of Ancient Microbial DNA
- Olivier Gorgé, E Andrew Bennett, Diyendo Massilani, …, Julien Daligault, Eva-Maria Geigl, Thierry Grange
- Methods Mol Biol, 10.1007/978-1-0716-2871-3_6
Simultaneous profiling of histone modifications and DNA methylation via nanopore sequencing
- Xue Yue, Zhiyuan Xie, Moran Li, …, Xiaoqing Zhang, Jian Yan, Yimeng Yin
- Nat Commun, 10.1038/s41467-022-35650-2
InDelGT: An integrated pipeline for extracting indel genotypes for genetic mapping in a hybrid population using next-generation sequencing data
- Zhiliang Pan, Jinpeng Zhang, Shengjun Bai, …, Shengjun Bai, Zhiting Li, Chunfa Tong
- None, 10.1002/aps3.11499
Three assays for in-solution enrichment of ancient human DNA at more than a million SNPs
- Nadin Rohland, Swapan Mallick, Matthew Mah, …, Robert Maier, Nick Patterson, David Reich
- Genome Res, 10.1101/gr.276728.122