Channel: Deep learning and GWAS

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2023 Articles

8 448 articles

Metabolic individuality: Limitations, challenges, and potential for clinical utility

  • Sarah H Elsea, Jennifer E Posey, Sarah H Elsea, Jennifer E Posey, Sarah H Elsea, Jennifer E Posey
  • Cell Metab, 10.1016/j.cmet.2023.01.007
Comment Section

Genetic evidence implicating natriuretic peptide receptor-3 in cardiovascular disease risk: a Mendelian randomization study

  • Héléne T Cronjé, Ville Karhunen, G Kees Hovingh, …, Jens O Lagerstedt, Michael Nyberg, Dipender Gill
  • BMC Med, 10.1186/s12916-023-02867-x
Comment Section

Characterizing the polygenic architecture of complex traits in populations of East Asian and European descent

  • Antonella De Lillo, Frank R Wendt, Gita A Pathak, …, Frank R Wendt, Gita A Pathak, Renato Polimanti
  • Hum Genomics, 10.1186/s40246-023-00514-3
Comment Section

Empowering Beginners in Bioinformatics with ChatGPT

  • Evelyn Shue, Li Liu, Bingxin Li, …, Zifeng Feng, Xin Li, Gangqing Hu
  • bioRxiv : the preprint server for biology, 10.1101/2023.03.07.531414
Comment Section

Genome-wide association studies of polygenic risk score-derived phenotypes may lead to inflated false positive rates

  • Danielle Posthuma, Wouter J Peyrot, Danielle Posthuma, …, Emil Uffelmann, Danielle Posthuma, Wouter J Peyrot
  • Sci Rep, 10.1038/s41598-023-29428-9
Comment Section

Genotyping and population characteristics of the China Kadoorie Biobank

Comment Section

Seeing humans through an evolutionary lens

  • Irene Gallego Romero, Irene Gallego Romero, Irene Gallego Romero, Irene Gallego Romero, Irene Gallego Romero
  • Science, 10.1126/science.adh0745
Comment Section

Genome-wide association analysis identifies ancestry-specific genetic variation associated with acute response to metformin and glipizide in SUGAR-MGH

  • Josephine H Li, Laura N Brenner, Varinderpal Kaur, …, Aaron Leong, Josep M Mercader, Jose C Florez
  • Diabetologia, 10.1007/s00125-023-05922-7
Comment Section

DeepGWAS: Enhance GWAS Signals for Neuropsychiatric Disorders via Deep Neural Network

Comment Section

Toward FAIR Knowledge Turns in Bioinformatics

Comment Section

2022 Articles

857 articles

Powerful, scalable and resource-efficient meta-analysis of rare variant associations in large whole genome sequencing studies

Comment Section

A comparison between similarity matrices for principal component analysis to assess population stratification in sequenced genetic data sets

  • Sanghun Lee, Georg Hahn, Julian Hecker, …, Rudolph E Tanzi, Christoph Lange, Dmitry Prokopenko
  • Brief Bioinform, 10.1093/bib/bbac611
Comment Section

Genetic influences on human blood metabolites in the Japanese population

  • Takeshi Iwasaki, Yoichiro Kamatani, Kazuhiro Sonomura, …, Koichiro Ohmura, Taka-Aki Sato, Fumihiko Matsuda
  • None, 10.1016/j.isci.2022.105738
Comment Section

Comprehensive 100-bp resolution genome-wide epigenomic profiling data for the hg38 human reference genome

Comment Section

Golgi apparatus, endoplasmic reticulum and mitochondrial function implicated in Alzheimer’s disease through polygenic risk and RNA sequencing

  • Karen Crawford, Ganna Leonenko, Emily Baker, …, Michael C O’Donovan, Valentina Escott-Price, Dobril K Ivanov
  • Mol Psychiatry, 10.1038/s41380-022-01926-8
Comment Section

DNA methylation QTL mapping across diverse human tissues provides molecular links between genetic variation and complex traits

  • Kathryn Demanelis, Yihao Lu, Meytal Chernoff, …, Muhammad G Kibriya, Lin S Chen, Brandon L Pierce
  • Nat Genet, 10.1038/s41588-022-01248-z
Comment Section

Damaging missense variants in IGF1R implicate a role for IGF-1 resistance in the etiology of type 2 diabetes

  • Eugene J Gardner, Katherine A Kentistou, Stasa Stankovic, …, Stephen O’Rahilly, Ken K Ong, John R B Perry
  • None, 10.1016/j.xgen.2022.100208
Comment Section

A genome-wide CRISPR screen identifies CALCOCO2 as a regulator of beta cell function influencing type 2 diabetes risk

  • Antje K Rottner, Yingying Ye, Elena Navarro-Guerrero, …, Daniel Ebner, Patrick E MacDonald, Anna L Gloyn
  • Nat Genet, 10.1038/s41588-022-01261-2
Comment Section

Insight into genetic, biological, and environmental determinants of sexual-dimorphism in type 2 diabetes and glucose-related traits

  • Amel Lamri, Monica De Paoli, Russell De Souza, …, Geoff Werstuck, Sonia Anand, Marie Pigeyre
  • None, 10.3389/fcvm.2022.964743
Comment Section

Optimized high-throughput screening of non-coding variants identified from genome-wide association studies

  • Tunc Morova, Yi Ding, Chia-Chi F Huang, …, Matthew L Freedman, Bogdan Pasaniuc, Nathan A Lack
  • Nucleic Acids Res, 10.1093/nar/gkac1198
Comment Section