Long-read sequencing reveals genomic diversity and associated plasmid movement of carbapenemase-producing bacteria in a UK hospital over 6 years
- Leah W Roberts, David A Enoch, Fahad Khokhar, …, Theodore Gouliouris, Zamin Iqbal, M Estée Török
- Microb Genom, 10.1099/mgen.0.001048
Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis
- Lindsay Sonnenkalb, Joshua James Carter, Andrea Spitaleri, …, Philip William Fowler, Matthias Merker, Stefan Niemann
- Lancet Microbe, 10.1016/s2666-5247(23)00002-2
Genomic Sequencing from Sputum for Tuberculosis Disease Diagnosis, Lineage Determination, and Drug Susceptibility Prediction
- Kayzad Nilgiriwala, Marie-Sylvianne Rabodoarivelo, Michael B Hall, …, Zamin Iqbal, Simon Grandjean Lapierre, Timothy M Walker
- J Clin Microbiol, 10.1128/jcm.01578-22
Deciphering the Tangible Spatio-Temporal Spread of a 25-Year Tuberculosis Outbreak Boosted by Social Determinants
- Mariana G López, Ma Isolina Campos-Herrero, Manuela Torres-Puente, …, DarÃo GarcÃa de Viedma, SofÃa Samper, Iñaki Comas
- Microbiol Spectr, 10.1128/spectrum.02826-22
Evaluation of Nanopore sequencing for Mycobacterium tuberculosis drug susceptibility testing and outbreak investigation: a genomic analysis
- Michael B Hall, Marie Sylvianne Rabodoarivelo, Anastasia Koch, …, Niaina Rakotosamimanana, Simon Grandjean Lapierre, Zamin Iqbal
- Lancet Microbe, 10.1016/s2666-5247(22)00301-9
Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes
- Martin Hunt, Brice Letcher, Kerri M Malone, …, Michael C Schatz, Srividya Ramakrishnan, Zamin Iqbal
- Genome Biol, 10.1186/s13059-022-02714-x
ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads
- Martin Hunt, Jeremy Swann, Bede Constantinides, …, Bede Constantinides, Philip W Fowler, Zamin Iqbal
- Bioinformatics, 10.1093/bioinformatics/btac311