IPRO+/-: Computational Protein Design Tool Allowing for Insertions and Deletions
- Ratul Chowdhury, Matthew J Grisewood, Veda Sheersh Boorla, Qiang Yan, Brian F Pfleger, Costas D Maranas
- Structure, 10.1016/j.str.2020.08.003
PoreDesigner for tuning solute selectivity in a robust and highly permeable outer membrane pore
- Ratul Chowdhury, Tingwei Ren, Manish Shankla, …, Aleksei Aksimentiev, Manish Kumar, Costas D Maranas
- Nat Commun, 10.1038/s41467-018-06097-1
Computational Redesign of Acyl-ACP Thioesterase with Improved Selectivity toward Medium-Chain-Length Fatty Acids
- Matthew J Grisewood, Néstor J Hernandez Lozada, James B Thoden, …, Hazel M Holden, Brian F Pfleger, Costas D Maranas
- None, 10.1021/acscatal.7b00408
The Iterative Protein Redesign and Optimization (IPRO) suite of programs
- Robert J Pantazes, Matthew J Grisewood, Tong Li, Nathanael P Gifford, Costas D Maranas
- J Comput Chem, 10.1002/jcc.23796
Methane oxidation by anaerobic archaea for conversion to liquid fuels
- Thomas J Mueller, Matthew J Grisewood, Hadi Nazem-Bokaee, …, James G Ferry, Thomas K Wood, Costas D Maranas
- J Ind Microbiol Biotechnol, 10.1007/s10295-014-1548-7
OptZyme: computational enzyme redesign using transition state analogues
- Matthew J Grisewood, Nathanael P Gifford, Robert J Pantazes, …, Patrick C Cirino, Michael J Janik, Costas D Maranas
- PLoS One, 10.1371/journal.pone.0075358