Two-way communication between cell cycle and metabolism in budding yeast: what do we know?
- Yanfei Zhang, Lucas van der Zee, Matteo Barberis, Yanfei Zhang, Lucas van der Zee, Matteo Barberis
- None, 10.3389/fmicb.2023.1187304
T cell phenotype switching in autoimmune disorders: Clinical significance of targeting metabolism
- Matteo Barberis, Alejandra Rojas López
- Clin Transl Med, 10.1002/ctm2.898
Unveiling Forkhead-mediated regulation of yeast cell cycle and metabolic networks
- Matteo Barberis, Thierry D G A Mondeel
- None, 10.1016/j.csbj.2022.03.033
Stigma/Style Cell-Cycle Inhibitor 1, a Regulator of Cell Proliferation, Interacts With a Specific 14-3-3 Protein and Is Degraded During Cell Division
- Edward J Strini, LÃgia T Bertolino, Juca A B San Martin, …, Nubia B Eloy, Matteo Barberis, Maria Helena S Goldman
- None, 10.3389/fpls.2022.857745
Cyclin/Forkhead-mediated coordination of cyclin waves: an autonomous oscillator rationalizing the quantitative model of Cdk control for budding yeast
- Matteo Barberis, Matteo Barberis
- NPJ Syst Biol Appl, 10.1038/s41540-021-00201-w
System-Level Scenarios for the Elucidation of T Cell-Mediated Germinal Center B Cell Differentiation
- Niels J M Verstegen, Victor Ubels, Hans V Westerhoff, S Marieke van Ham, Matteo Barberis
- Front Immunol, 10.3389/fimmu.2021.734282
A multi-approach and multi-scale platform to model CD4+ T cells responding to infections
- Kenneth Y Wertheim, Bhanwar Lal Puniya, Alyssa La Fleur, Ab Rauf Shah, Matteo Barberis, Tomáš Helikar
- PLoS Comput Biol, 10.1371/journal.pcbi.1009209
SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems
- Andreas Dräger, Tomáš Helikar, Matteo Barberis, …, MarÃa RodrÃguez MartÃnez, Julio Saez-Rodriguez, Juilee Thakar
- Bioinformatics, 10.1093/bioinformatics/btab229
Quantitative model of eukaryotic Cdk control through the Forkhead CONTROLLER
- Matteo Barberis
- NPJ Syst Biol Appl, 10.1038/s41540-021-00187-5
Sirtuins-Mediated System-Level Regulation of Mammalian Tissues at the Interface between Metabolism and Cell Cycle: A Systematic Review
- Parcival Maissan, Eva J Mooij, Matteo Barberis
- None, 10.3390/biology10030194
Integrative computational approach identifies drug targets in CD4 + T-cell-mediated immune disorders
- Bhanwar Lal Puniya, Rada Amin, Bailee Lichter, …, Ab Rauf Shah, Matteo Barberis, Tomáš Helikar
- NPJ Syst Biol Appl, 10.1038/s41540-020-00165-3
Computer-Aided Whole-Cell Design: Taking a Holistic Approach by Integrating Synthetic With Systems Biology
- Lucia Marucci, Matteo Barberis, Jonathan Karr, …, Richard Seabrook, William Shaw, Christopher Woods
- None, 10.3389/fbioe.2020.00942