ecmtool: fast and memory-efficient enumeration of elementary conversion modes
- Bianca Buchner, Tom Clement, Daan de Groot, …, Tom J Clement, Daan H de Groot, Jürgen Zanghellini
- Bioinformatics, 10.1093/bioinformatics/btad095
Homologue series detection and management in LC-MS data with homologueDiscoverer
- Kevin Mildau, Justin J J van der Hooft, Mira Flasch, …, Gunda Koellensperger, Jürgen Zanghellini, Christoph Büschl
- Bioinformatics, 10.1093/bioinformatics/btac647
Heterogeneous multimeric metabolite ion species observed in LC-MS based metabolomics data sets
- Yasin El Abiead, Christoph Bueschl, Lisa Panzenboeck, …, Jürgen Zanghellini, Pieter C Dorrestein, Gunda Koellensperger
- Anal Chim Acta, 10.1016/j.aca.2022.340352
PeakBot: machine-learning-based chromatographic peak picking
- Christoph Bueschl, Maria Doppler, Elisabeth Varga, …, Mira Flasch, Benedikt Warth, Juergen Zanghellini
- Bioinformatics, 10.1093/bioinformatics/btac344
Elementary vectors and autocatalytic sets for resource allocation in next-generation models of cellular growth
- Stefan Müller, Diana Széliová, Jürgen Zanghellini
- PLoS Comput Biol, 10.1371/journal.pcbi.1009843
EFMlrs: a Python package for elementary flux mode enumeration via lexicographic reverse search
- Bianca A Buchner, Jürgen Zanghellini
- BMC Bioinformatics, 10.1186/s12859-021-04417-9
Finger sweat analysis enables short interval metabolic biomonitoring in humans
- Julia Brunmair, Mathias Gotsmy, Laura Niederstaetter, …, Jürgen Zanghellini, Samuel M Meier-Menches, Christopher Gerner
- Nat Commun, 10.1038/s41467-021-26245-4
Thermodynamic Genome-Scale Metabolic Modeling of Metallodrug Resistance in Colorectal Cancer
- Helena A Herrmann, Mate Rusz, Dina Baier, …, Walter Berger, Gunda Koellensperger, Jürgen Zanghellini
- None, 10.3390/cancers13164130
Inclusion of maintenance energy improves the intracellular flux predictions of CHO
- Diana Széliová, Jerneja Štor, Isabella Thiel, …, Jürgen Zanghellini, David E Ruckerbauer, Isabel Rocha
- PLoS Comput Biol, 10.1371/journal.pcbi.1009022
Towards rational glyco-engineering in CHO: from data to predictive models
- Jerneja Štor, David E Ruckerbauer, Diana Széliová, Jürgen Zanghellini, Nicole Borth
- Curr Opin Biotechnol, 10.1016/j.copbio.2021.05.003
The sources and transmission routes of microbial populations throughout a meat processing facility
- Benjamin Zwirzitz, Stefanie U Wetzels, Emmanuel D Dixon, …, Monika Dzieciol, Martin Wagner, Evelyne Selberherr
- NPJ Biofilms Microbiomes, 10.1038/s41522-020-0136-z
Robust Analytical Methods for the Accurate Quantification of the Total Biomass Composition of Mammalian Cells
- Diana Széliová, Harald Schoeny, Špela Knez, …, Nicole Borth, Jürgen Zanghellini, David E Ruckerbauer
- Methods Mol Biol, 10.1007/978-1-0716-0159-4_7