Distinct evolutionary trajectories in the Escherichia coli pangenome occur within sequence types
- Elizabeth A Cummins, Rebecca J Hall, Chris Connor, …, Chris Connor, James O McInerney, Alan McNally
- Microb Genom, 10.1099/mgen.0.000903
Prokaryotic Pangenomes Act as Evolving Ecosystems
- James O McInerney, James O McInerney, James O McInerney, James O McInerney, James O McInerney, James O McInerney
- Mol Biol Evol, 10.1093/molbev/msac232
Gene essentiality evolves across a pangenome
- Alan J S Beavan, James O McInerney
- Nat Microbiol, 10.1038/s41564-022-01231-8
Prokaryote pangenomes are dynamic entities
- Elizabeth A Cummins, Rebecca J Hall, James O McInerney, Alan McNally
- Curr Opin Microbiol, 10.1016/j.mib.2022.01.005
Mechanisms That Shape Microbial Pangenomes
- Maria Rosa Domingo-Sananes, James O McInerney
- Trends Microbiol, 10.1016/j.tim.2020.12.004
Horizontal Gene Transfer as a Source of Conflict and Cooperation in Prokaryotes
- Rebecca J Hall, Fiona J Whelan, James O McInerney, Yaqing Ou, Maria Rosa Domingo-Sananes
- None, 10.3389/fmicb.2020.01569
Coinfinder: detecting significant associations and dissociations in pangenomes
- Fiona Jane Whelan, Martin Rusilowicz, James Oscar McInerney
- Microb Genom, 10.1099/mgen.0.000338
Eukaryote Genes Are More Likely than Prokaryote Genes to Be Composites
- Yaqing Ou, James O McInerney
- Genes (Basel), 10.3390/genes10090648
Gene Fusions Derived by Transcriptional Readthrough are Driven by Segmental Duplication in Human
- Ann M McCartney, Edel M Hyland, Paul Cormican, …, James O McInerney, Tomas Marques-Bonet, Mary J O’Connell
- Genome Biol Evol, 10.1093/gbe/evz163
Formation of chimeric genes with essential functions at the origin of eukaryotes
- Raphaël Méheust, Debashish Bhattacharya, Jananan S Pathmanathan, James O McInerney, Philippe Lopez, Eric Bapteste
- BMC Biol, 10.1186/s12915-018-0500-0
Bipartite Network Analysis of Gene Sharings in the Microbial World
- Eduardo Corel, Raphaël Méheust, Andrew K Watson, James O McInerney, Philippe Lopez, Eric Bapteste
- Mol Biol Evol, 10.1093/molbev/msy001